Variant report

Variant	rs73677594
Chromosome Location	chr7:12338248-12338249
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:12333884..12336168-chr7:12337724..12340459,4	K562	blood:

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs55664102	1.00[AMR][1000 genomes]
rs55690557	1.00[AMR][1000 genomes]
rs55717500	1.00[AMR][1000 genomes]
rs55802346	1.00[AMR][1000 genomes]
rs56038003	1.00[AMR][1000 genomes]
rs58430103	1.00[AMR][1000 genomes]
rs59138526	1.00[AMR][1000 genomes]
rs60783223	1.00[AMR][1000 genomes]
rs60964090	1.00[AMR][1000 genomes]
rs61275641	1.00[AMR][1000 genomes]
rs61394799	1.00[AMR][1000 genomes]
rs61559614	1.00[AMR][1000 genomes]
rs61737650	1.00[AMR][1000 genomes]
rs6959148	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6959441	1.00[AMR][1000 genomes]
rs6959444	1.00[AMR][1000 genomes]
rs6977409	1.00[AMR][1000 genomes]
rs6979296	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6979460	1.00[AMR][1000 genomes]
rs6979661	1.00[AMR][1000 genomes]
rs73677577	1.00[AMR][1000 genomes]
rs73677581	1.00[AMR][1000 genomes]
rs73677583	1.00[AMR][1000 genomes]
rs73677585	1.00[AMR][1000 genomes]
rs73677586	1.00[AMR][1000 genomes]
rs73677587	1.00[AMR][1000 genomes]
rs73677589	1.00[AMR][1000 genomes]
rs73677590	1.00[AMR][1000 genomes]
rs73677598	1.00[AMR][1000 genomes]
rs73678103	1.00[AMR][1000 genomes]
rs73678104	1.00[AMR][1000 genomes]
rs73678106	1.00[AMR][1000 genomes]
rs73678107	1.00[AMR][1000 genomes]
rs73678108	1.00[AMR][1000 genomes]
rs73678110	1.00[AMR][1000 genomes]
rs73678111	1.00[AMR][1000 genomes]
rs73678113	1.00[AMR][1000 genomes]
rs73678115	1.00[AMR][1000 genomes]
rs73678117	1.00[AMR][1000 genomes]
rs73678119	1.00[AMR][1000 genomes]
rs73678120	1.00[AMR][1000 genomes]
rs73678122	1.00[AMR][1000 genomes]
rs73678123	1.00[AMR][1000 genomes]
rs73678126	1.00[AMR][1000 genomes]
rs73679918	1.00[AMR][1000 genomes]
rs73679941	1.00[AMR][1000 genomes]
rs73679943	1.00[AMR][1000 genomes]
rs73679945	1.00[AMR][1000 genomes]
rs73679947	1.00[AMR][1000 genomes]
rs73679948	1.00[AMR][1000 genomes]
rs73679949	1.00[AMR][1000 genomes]
rs73679950	1.00[AMR][1000 genomes]
rs73679951	1.00[AMR][1000 genomes]
rs73679952	1.00[AMR][1000 genomes]
rs73679953	1.00[AMR][1000 genomes]
rs73679957	1.00[AMR][1000 genomes]
rs73679959	1.00[AMR][1000 genomes]
rs73679961	1.00[AMR][1000 genomes]
rs73679962	1.00[AMR][1000 genomes]
rs73679963	1.00[AMR][1000 genomes]
rs73679964	1.00[AMR][1000 genomes]
rs73679965	1.00[AMR][1000 genomes]
rs73679966	1.00[AMR][1000 genomes]
rs73679967	1.00[AMR][1000 genomes]
rs73679968	1.00[AMR][1000 genomes]
rs73679969	1.00[AMR][1000 genomes]
rs73679970	1.00[AMR][1000 genomes]
rs73679972	1.00[AMR][1000 genomes]
rs73679973	1.00[AMR][1000 genomes]
rs73679976	1.00[AMR][1000 genomes]
rs73680913	1.00[AMR][1000 genomes]
rs73680919	1.00[AMR][1000 genomes]
rs73680924	1.00[AMR][1000 genomes]
rs73680949	1.00[AMR][1000 genomes]
rs73680950	1.00[AMR][1000 genomes]
rs73680951	1.00[AMR][1000 genomes]
rs73680952	1.00[AMR][1000 genomes]
rs73680953	1.00[AMR][1000 genomes]
rs73680954	1.00[AMR][1000 genomes]
rs7792103	1.00[AMR][1000 genomes]
rs7810598	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv534432	chr7:12148960-12693032	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1024554	chr7:12214722-12967418	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv538735	chr7:12214722-12967418	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
5	nsv1033704	chr7:12286225-12355773	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv887629	chr7:12304555-12400837	ZNF genes & repeats Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1019021	chr7:12310445-12375516	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv887630	chr7:12323757-12400837	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12335200-12338400	Enhancers	Placenta	Placenta
2	chr7:12336200-12342400	Weak transcription	HMEC	breast
3	chr7:12337000-12338400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr7:12337400-12338600	Enhancers	H1 Cell Line	embryonic stem cell
5	chr7:12337600-12342400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:12338000-12338400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr7:12338000-12338600	Enhancers	Placenta Amnion	Placenta Amnion
8	chr7:12338000-12342200	Weak transcription	NHEK	skin
9	chr7:12338200-12338400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:12338200-12338800	Enhancers	Adipose Nuclei	Adipose

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