Variant report

Variant	rs73678974
Chromosome Location	chr7:13089517-13089518
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:13088931..13090663-chr7:13093892..13095543,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11973913	1.00[AFR][1000 genomes]
rs11980133	1.00[AFR][1000 genomes]
rs11980269	0.89[AFR][1000 genomes]
rs11980293	1.00[AFR][1000 genomes]
rs11981386	1.00[AFR][1000 genomes]
rs55807394	1.00[AFR][1000 genomes]
rs55998412	0.89[AFR][1000 genomes]
rs57218207	0.87[AFR][1000 genomes]
rs59807510	1.00[AFR][1000 genomes]
rs60038254	1.00[AFR][1000 genomes]
rs60149324	1.00[AFR][1000 genomes]
rs60506597	1.00[AFR][1000 genomes]
rs6961047	1.00[AFR][1000 genomes]
rs73678951	1.00[AFR][1000 genomes]
rs73678952	1.00[AFR][1000 genomes]
rs73678954	1.00[AFR][1000 genomes]
rs73678955	1.00[AFR][1000 genomes]
rs73678958	1.00[AFR][1000 genomes]
rs73678960	0.89[AFR][1000 genomes]
rs73678962	0.89[AFR][1000 genomes]
rs73678963	1.00[AFR][1000 genomes]
rs73678964	0.89[AFR][1000 genomes]
rs73678966	0.89[AFR][1000 genomes]
rs73678969	0.89[AFR][1000 genomes]
rs73678970	0.89[AFR][1000 genomes]
rs73678973	1.00[AFR][1000 genomes]
rs7787922	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932020	chr7:12676890-13239551	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv868830	chr7:12712753-13517417	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv606235	chr7:12781381-13205950	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1020568	chr7:12802640-13183737	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1029771	chr7:12927648-13153855	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv538736	chr7:12927648-13153855	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1026624	chr7:12963907-13123408	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1019173	chr7:13063854-13585360	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv538737	chr7:13063854-13585360	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv887643	chr7:13086613-13211263	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:13082800-13089800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr7:13087200-13089600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr7:13089200-13089600	Enhancers	A549	lung
4	chr7:13089200-13090600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:13089400-13090000	Enhancers	NHLF	lung
6	chr7:13089400-13090200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:13089400-13090200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:13089400-13090600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:13089400-13090600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr7:13089400-13091000	Enhancers	K562	blood
11	chr7:13089400-13091200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:13089400-13091800	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links