Variant report

Variant	rs73679208
Chromosome Location	chr8:27340849-27340850
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs56187906	0.90[AFR][1000 genomes]
rs57442348	0.87[AFR][1000 genomes]
rs59338093	0.96[AFR][1000 genomes]
rs59365325	0.87[AFR][1000 genomes]
rs59683646	0.96[AFR][1000 genomes]
rs60257378	0.96[AFR][1000 genomes]
rs60319016	0.83[AFR][1000 genomes]
rs60709011	0.96[AFR][1000 genomes]
rs61586133	0.87[AFR][1000 genomes]
rs6558001	0.93[AFR][1000 genomes]
rs6995058	0.90[AFR][1000 genomes]
rs7006736	0.93[AFR][1000 genomes]
rs7017595	0.90[AFR][1000 genomes]
rs72475804	0.90[AFR][1000 genomes]
rs72475805	0.83[AFR][1000 genomes]
rs72475823	0.87[AFR][1000 genomes]
rs72475825	0.87[AFR][1000 genomes]
rs72475857	0.96[AFR][1000 genomes]
rs72475878	0.96[AFR][1000 genomes]
rs72475879	0.96[AFR][1000 genomes]
rs72475898	0.96[AFR][1000 genomes]
rs72477587	0.90[AFR][1000 genomes]
rs72477588	0.90[AFR][1000 genomes]
rs72478904	0.90[AFR][1000 genomes]
rs73679204	0.93[AFR][1000 genomes]
rs7819348	0.96[AFR][1000 genomes]
rs7838218	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020582	chr8:27309768-27406844	Weak transcription Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1019182	chr8:27314836-27398162	Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv831275	chr8:27328290-27481605	Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:27322800-27348200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:27337000-27341200	Weak transcription	Esophagus	oesophagus
3	chr8:27337000-27341600	Weak transcription	Spleen	Spleen
4	chr8:27337200-27341400	Weak transcription	Liver	Liver
5	chr8:27339200-27341800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr8:27340000-27341600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr8:27340000-27341800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr8:27340000-27341800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr8:27340000-27341800	Enhancers	HepG2	liver
10	chr8:27340000-27341800	Enhancers	HMEC	breast
11	chr8:27340600-27341200	Flanking Active TSS	NHEK	skin
12	chr8:27340600-27341600	Weak transcription	Fetal Thymus	thymus
13	chr8:27340600-27342400	Enhancers	Fetal Intestine Large	intestine
14	chr8:27340600-27343600	Weak transcription	Thymus	Thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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