Variant report

Variant	rs73679711
Chromosome Location	chr7:14371538-14371539
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17712036	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs1991732	0.85[AFR][1000 genomes]
rs2190671	1.00[ASN][1000 genomes]
rs2215038	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14366800-14371800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr7:14368800-14371800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr7:14368800-14375600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:14368800-14379000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr7:14371000-14371600	Enhancers	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links