Variant report

Variant	rs73679864
Chromosome Location	chr7:16784943-16784944
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:16776463..16781643-chr7:16783792..16791142,8	K562	blood:
2	chr7:16783411..16785467-chr7:16789588..16791231,2	K562	blood:
3	chr7:16783316..16786231-chr7:16801577..16804005,2	K562	blood:
4	chr7:16783967..16786299-chr7:16789403..16791830,3	K562	blood:
5	chr7:16682801..16684862-chr7:16783042..16785967,2	K562	blood:
6	chr7:16783313..16785112-chr7:16792192..16793876,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106537	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1149530	1.00[ASN][1000 genomes]
rs818800	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv1028125	chr7:16529160-16847225	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv830912	chr7:16623196-16791974	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1024059	chr7:16639432-16836425	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16771200-16788400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:16777600-16785000	Enhancers	K562	blood
3	chr7:16779800-16785600	Enhancers	Fetal Lung	lung
4	chr7:16780200-16786400	Weak transcription	Ovary	ovary
5	chr7:16781400-16793000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr7:16781600-16786800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr7:16781600-16786800	Weak transcription	Fetal Heart	heart
8	chr7:16781800-16786800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:16781800-16786800	Weak transcription	NHDF-Ad	bronchial
10	chr7:16782200-16787000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr7:16782600-16785600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr7:16782800-16785200	Weak transcription	Fetal Intestine Small	intestine
13	chr7:16783600-16792800	Weak transcription	NH-A	brain
14	chr7:16784000-16785200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr7:16784000-16785400	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr7:16784000-16785400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr7:16784000-16785400	Enhancers	Primary hematopoietic stem cells	blood
18	chr7:16784000-16785600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr7:16784000-16785600	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr7:16784000-16785600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr7:16784000-16785800	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr7:16784000-16785800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr7:16784200-16785000	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr7:16784200-16785000	Enhancers	Adipose Nuclei	Adipose
25	chr7:16784200-16785200	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr7:16784200-16785400	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr7:16784200-16785400	Weak transcription	Fetal Stomach	stomach
28	chr7:16784200-16785600	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr7:16784200-16785800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr7:16784200-16786000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr7:16784200-16786800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr7:16784400-16785200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
33	chr7:16784400-16786000	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr7:16784400-16786800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr7:16784400-16792800	Weak transcription	Right Atrium	heart
36	chr7:16784800-16785400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr7:16784800-16786400	Weak transcription	Left Ventricle	heart
38	chr7:16784800-16786800	Weak transcription	Right Ventricle	heart
39	chr7:16784800-16792800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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