Variant report

Variant	rs73680347
Chromosome Location	chr8:54791050-54791051
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr8:54789500-54791579	HL-60	blood:	n/a	chr8:54790562-54790575 chr8:54791160-54791170 chr8:54790555-54790569 chr8:54790555-54790575 chr8:54790555-54790575 chr8:54790555-54790575 chr8:54790559-54790572 chr8:54790128-54790146
2	MXI1	chr8:54789869-54791370	IMR90	lung:	n/a	chr8:54791026-54791041
3	REST	chr8:54789955-54791108	ECC-1	luminal epithelium:	n/a	chr8:54790562-54790575 chr8:54790555-54790569 chr8:54790555-54790575 chr8:54790555-54790575 chr8:54790555-54790575 chr8:54790559-54790572 chr8:54790128-54790146
4	REST	chr8:54789965-54791529	PFSK-1	brain:	n/a	chr8:54790562-54790575 chr8:54791160-54791170 chr8:54790555-54790569 chr8:54790555-54790575 chr8:54790555-54790575 chr8:54790555-54790575 chr8:54790559-54790572 chr8:54790128-54790146
5	SUZ12	chr8:54788529-54792712	NT2-D1	testis:	n/a	n/a
6	REST	chr8:54790021-54791278	PFSK-1	brain:	n/a	chr8:54790562-54790575 chr8:54791160-54791170 chr8:54790555-54790569 chr8:54790555-54790575 chr8:54790555-54790575 chr8:54790555-54790575 chr8:54790559-54790572 chr8:54790128-54790146

No.	Distal block	Cell Line	Cell type
1	chr8:54789285..54792223-chr8:54932900..54934940,2	K562	blood:
2	chr8:54785381..54788323-chr8:54789364..54792317,2	MCF-7	breast:
3	chr8:54788748..54791564-chr8:54792392..54794472,3	K562	blood:
4	chr8:54783474..54786409-chr8:54789438..54792325,2	K562	blood:

Variant related genes	Relation type
RGS20	TF binding region
ENSG00000272457	TF binding region
ENSG00000147509	Chromatin interaction
ENSG00000187735	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11990964	1.00[EUR][1000 genomes]
rs16919597	1.00[AMR][1000 genomes]
rs57594047	1.00[EUR][1000 genomes]
rs57924266	1.00[EUR][1000 genomes]
rs59128603	1.00[EUR][1000 genomes]
rs60437052	1.00[EUR][1000 genomes]
rs73680334	1.00[EUR][1000 genomes]
rs73680336	1.00[EUR][1000 genomes]
rs73680345	1.00[EUR][1000 genomes]
rs73680348	1.00[EUR][1000 genomes]
rs73680349	1.00[EUR][1000 genomes]
rs73680350	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021775	chr8:54631303-54827173	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv539621	chr8:54631303-54827173	Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1023983	chr8:54790309-55145770	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv539623	chr8:54790309-55145770	Bivalent Enhancer Genic enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54785600-54791400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr8:54788600-54791600	Weak transcription	A549	lung
3	chr8:54789200-54792400	Enhancers	Lung	lung
4	chr8:54789400-54791400	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
5	chr8:54789400-54792000	Bivalent Enhancer	Fetal Stomach	stomach
6	chr8:54789400-54792400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
7	chr8:54789400-54792400	Enhancers	Spleen	Spleen
8	chr8:54789600-54792200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
9	chr8:54789600-54792200	Bivalent Enhancer	Fetal Intestine Large	intestine
10	chr8:54789600-54792200	Bivalent Enhancer	Placenta	Placenta
11	chr8:54789800-54791200	Bivalent Enhancer	Fetal Brain Male	brain
12	chr8:54790000-54792000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
13	chr8:54790000-54792200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
14	chr8:54790200-54791600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
15	chr8:54790200-54791800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr8:54790200-54792400	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
17	chr8:54790400-54791200	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
18	chr8:54790400-54791400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr8:54790400-54791400	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr8:54790400-54791800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr8:54790400-54792200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
22	chr8:54790400-54792200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
23	chr8:54790600-54791200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr8:54790600-54791200	Bivalent/Poised TSS	NHLF	lung
25	chr8:54790600-54791600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr8:54790600-54791600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
27	chr8:54790600-54791600	Bivalent/Poised TSS	NHDF-Ad	bronchial
28	chr8:54790600-54791800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr8:54790600-54791800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr8:54790600-54791800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
31	chr8:54790600-54791800	Weak transcription	Gastric	stomach
32	chr8:54790600-54792000	Bivalent Enhancer	Fetal Muscle Leg	muscle
33	chr8:54790600-54792200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
34	chr8:54790600-54792200	Bivalent Enhancer	Liver	Liver
35	chr8:54790800-54791200	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
36	chr8:54790800-54791200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
37	chr8:54790800-54791200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr8:54790800-54791200	Bivalent Enhancer	HepG2	liver
39	chr8:54790800-54791400	Bivalent Enhancer	Brain Cingulate Gyrus	brain
40	chr8:54790800-54791400	Bivalent Enhancer	Brain Germinal Matrix	brain
41	chr8:54790800-54791600	Bivalent Enhancer	Fetal Brain Female	brain
42	chr8:54790800-54791800	Enhancers	Right Atrium	heart
43	chr8:54790800-54791800	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
44	chr8:54790800-54791800	Bivalent Enhancer	HUVEC	blood vessel
45	chr8:54790800-54792000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr8:54790800-54792000	Bivalent Enhancer	Brain Hippocampus Middle	brain
47	chr8:54790800-54792000	Enhancers	Ovary	ovary
48	chr8:54790800-54792000	Weak transcription	Pancreas	Pancrea
49	chr8:54790800-54792000	Enhancers	Right Ventricle	heart
50	chr8:54790800-54792000	Weak transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links