Variant report

Variant	rs73682023
Chromosome Location	chr7:16469407-16469408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10215782	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10261127	1.00[AMR][1000 genomes]
rs10265018	1.00[ASN][1000 genomes]
rs10268957	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10280186	1.00[AMR][1000 genomes]
rs11977941	1.00[AMR][1000 genomes]
rs13438366	1.00[AMR][1000 genomes]
rs17169463	1.00[AMR][1000 genomes]
rs73682105	1.00[AMR][1000 genomes]
rs73682121	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv2759514	chr7:16236162-16527390	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv2758105	chr7:16272822-16527390	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv1034151	chr7:16415497-16578081	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16461600-16469600	Weak transcription	Gastric	stomach
2	chr7:16461600-16478600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:16462200-16473200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:16462600-16473400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:16468000-16470200	Enhancers	K562	blood
6	chr7:16468000-16470200	Enhancers	NH-A	brain
7	chr7:16468000-16470400	Enhancers	Stomach Mucosa	stomach
8	chr7:16468000-16470400	Enhancers	Osteobl	bone
9	chr7:16468200-16469800	Enhancers	Muscle Satellite Cultured Cells	--
10	chr7:16468600-16469600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:16468600-16469600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr7:16468800-16469600	Weak transcription	NHLF	lung
13	chr7:16469200-16469600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr7:16469400-16470000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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