Variant report

Variant	rs73683008
Chromosome Location	chr7:21938534-21938535
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:21938160..21940188-chr7:21943715..21946302,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164649	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs73683007	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7808371	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9638793	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9639403	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv1027453	chr7:21918474-21982448	Enhancers Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21910000-21939400	Weak transcription	Left Ventricle	heart
2	chr7:21923200-21938600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:21924400-21945400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:21926600-21942600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr7:21926800-21939200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr7:21927800-21940200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:21928000-21942600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr7:21928200-21938600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:21928200-21939600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:21931000-21942400	Weak transcription	Fetal Kidney	kidney
11	chr7:21932600-21942000	Weak transcription	Brain Germinal Matrix	brain
12	chr7:21932600-21951000	Weak transcription	HSMM	muscle
13	chr7:21932800-21938800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr7:21933000-21963200	Weak transcription	A549	lung
15	chr7:21933600-21939000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr7:21934000-21950400	Strong transcription	Cortex derived primary cultured neurospheres	brain
17	chr7:21934200-21951600	Weak transcription	Fetal Brain Male	brain
18	chr7:21935200-21942200	Weak transcription	HMEC	breast
19	chr7:21936400-21942400	Weak transcription	NH-A	brain
20	chr7:21936600-21938600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr7:21936600-21939000	Weak transcription	Fetal Intestine Large	intestine
22	chr7:21936600-21942000	Weak transcription	HSMMtube	muscle
23	chr7:21936600-21956400	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr7:21936600-21956600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr7:21936800-21939000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr7:21936800-21945200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr7:21936800-21945200	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr7:21937000-21939000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr7:21937000-21939000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr7:21937000-21942200	Weak transcription	Brain Angular Gyrus	brain
31	chr7:21937000-21952200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr7:21937000-21956400	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr7:21937200-21938800	Genic enhancers	Fetal Thymus	thymus
34	chr7:21937200-21939800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr7:21937200-21956600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
36	chr7:21937400-21940800	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr7:21937400-21950800	Weak transcription	Right Atrium	heart
38	chr7:21937400-21956000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr7:21937600-21938600	Flanking Active TSS	GM12878-XiMat	blood
40	chr7:21937600-21940400	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr7:21937600-21940800	Strong transcription	Muscle Satellite Cultured Cells	--
42	chr7:21937600-21941800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr7:21937600-21942400	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr7:21937600-21952000	Weak transcription	Psoas Muscle	Psoas
45	chr7:21937600-21952800	Strong transcription	Thymus	Thymus
46	chr7:21937600-21956200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr7:21937600-21956400	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr7:21937800-21939200	Enhancers	Fetal Heart	heart
49	chr7:21937800-21939400	Weak transcription	Osteobl	bone
50	chr7:21937800-21940800	Weak transcription	Liver	Liver

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