Variant report

Variant	rs73683093
Chromosome Location	chr7:22044744-22044745
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1174947	1.00[AMR][1000 genomes]
rs1624416	1.00[AMR][1000 genomes]
rs1730935	1.00[AMR][1000 genomes]
rs4077528	1.00[AMR][1000 genomes]
rs6965583	1.00[AMR][1000 genomes]
rs72658841	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv870325	chr7:21979039-22120493	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22041000-22045000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr7:22041000-22047000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr7:22041200-22046800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr7:22042800-22047000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr7:22044400-22045400	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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