Variant report

Variant	rs73683214
Chromosome Location	chr7:26100990-26100991
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:26100956..26102621-chr7:26104473..26107390,2	K562	blood:
2	chr7:25990246..25992488-chr7:26100564..26102799,3	MCF-7	breast:
3	chr7:25935063..25935626-chr7:26100854..26101524,2	K562	blood:
4	chr7:26035423..26036364-chr7:26100860..26101483,2	MCF-7	breast:
5	chr7:26096714..26102069-chr7:26240159..26243560,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000122565	Chromatin interaction
ENSG00000122566	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs55872367	1.00[AMR][1000 genomes]
rs56928441	1.00[AMR][1000 genomes]
rs57292270	1.00[AMR][1000 genomes]
rs61229822	1.00[AMR][1000 genomes]
rs6946086	1.00[AMR][1000 genomes]
rs6968009	1.00[AMR][1000 genomes]
rs73683203	0.83[AMR][1000 genomes]
rs73683204	0.83[AMR][1000 genomes]
rs73683206	1.00[AMR][1000 genomes]
rs73683210	1.00[AMR][1000 genomes]
rs73683211	1.00[AMR][1000 genomes]
rs73683213	1.00[AMR][1000 genomes]
rs73685543	0.83[AMR][1000 genomes]
rs73685545	1.00[AMR][1000 genomes]
rs73685548	1.00[AMR][1000 genomes]
rs73685549	1.00[AMR][1000 genomes]
rs73685550	1.00[AMR][1000 genomes]
rs73685551	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv606432	chr7:25988185-26223294	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	102 gene(s)	inside rSNPs	diseases
4	nsv1019804	chr7:26057723-26214280	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1021455	chr7:26061848-26113797	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1024345	chr7:26063806-26132278	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv1015432	chr7:26069740-26126619	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv887849	chr7:26075094-26234302	Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
9	nsv1024986	chr7:26079829-26128758	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	nsv1026480	chr7:26090236-26128758	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv1031125	chr7:26090236-26145401	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	nsv1032005	chr7:26096504-26127670	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26098200-26101200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr7:26100000-26101000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr7:26100000-26101800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr7:26100200-26101000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr7:26100200-26101000	Enhancers	Dnd41	blood
6	chr7:26100200-26101400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr7:26100200-26101400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr7:26100200-26101400	Enhancers	Colon Smooth Muscle	Colon
9	chr7:26100200-26101400	Enhancers	Fetal Stomach	stomach
10	chr7:26100200-26101800	Enhancers	Brain Germinal Matrix	brain
11	chr7:26100400-26101000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr7:26100400-26101400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr7:26100400-26101400	Enhancers	Primary hematopoietic stem cells	blood
14	chr7:26100400-26101400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr7:26100400-26101400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr7:26100400-26101400	Enhancers	Duodenum Mucosa	Duodenum
17	chr7:26100600-26101400	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr7:26100600-26101400	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr7:26100600-26101400	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr7:26100600-26101400	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr7:26100600-26101400	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr7:26100800-26101200	Weak transcription	Fetal Muscle Leg	muscle
23	chr7:26100800-26101400	Enhancers	HUES48 Cell Line	embryonic stem cell

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