Variant report
| Variant | rs73683306 |
|---|---|
| Chromosome Location | chr8:61054566-61054567 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-RAB2A-5 | chr8:61054380-61054701 | NONHSAT126817 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs56867466 | 1.00[AFR][1000 genomes] |
| rs57127061 | 1.00[AFR][1000 genomes] |
| rs58103305 | 1.00[AFR][1000 genomes] |
| rs59182035 | 1.00[AFR][1000 genomes] |
| rs73684924 | 1.00[AFR][1000 genomes] |
| rs73684928 | 1.00[AFR][1000 genomes] |
| rs73684930 | 1.00[AFR][1000 genomes] |
| rs73684951 | 1.00[AFR][1000 genomes] |
| rs73686326 | 1.00[AFR][1000 genomes] |
| rs73686327 | 1.00[AFR][1000 genomes] |
| rs73686328 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv917756 | chr8:60942299-61862796 | Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 74 gene(s) | inside rSNPs | diseases |
| 2 | nsv831332 | chr8:60985600-61157730 | Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
