Variant report

Variant	rs73683794
Chromosome Location	chr8:69905178-69905179
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs55914427	1.00[AFR][1000 genomes]
rs56350065	1.00[AFR][1000 genomes]
rs57331149	1.00[AFR][1000 genomes]
rs58281208	1.00[AFR][1000 genomes]
rs60314331	1.00[AFR][1000 genomes]
rs73683739	1.00[AFR][1000 genomes]
rs73683741	1.00[AFR][1000 genomes]
rs73683750	1.00[AFR][1000 genomes]
rs73683754	1.00[AFR][1000 genomes]
rs73683755	1.00[AFR][1000 genomes]
rs73683792	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv33049	chr8:69836813-69943360	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69879600-69917200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:69903000-69905800	Enhancers	NHDF-Ad	bronchial
3	chr8:69903400-69906400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr8:69903600-69906200	Flanking Active TSS	Osteobl	bone
5	chr8:69903800-69906400	Enhancers	HSMM	muscle
6	chr8:69904000-69905200	Weak transcription	Ovary	ovary
7	chr8:69904000-69906200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr8:69904200-69906200	Enhancers	HSMMtube	muscle
9	chr8:69904400-69905800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr8:69904800-69905400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr8:69904800-69905800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:69904800-69906200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr8:69905000-69905200	Flanking Active TSS	NHLF	lung
14	chr8:69905000-69905800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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