Variant report

Variant	rs736838
Chromosome Location	chr6:100874629-100874630
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11966218	1.00[AMR][1000 genomes]
rs1395123	1.00[AMR][1000 genomes]
rs2213593	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59094841	1.00[AMR][1000 genomes]
rs6926144	1.00[AMR][1000 genomes]
rs7739063	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1028122	chr6:100774245-100964347	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1023710	chr6:100810738-101001115	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv538388	chr6:100810738-101001115	Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv515895	chr6:100868779-100910798	Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100838400-100874800	Weak transcription	Psoas Muscle	Psoas
2	chr6:100856800-100874800	Weak transcription	Fetal Muscle Leg	muscle
3	chr6:100862200-100890600	Weak transcription	Adipose Nuclei	Adipose
4	chr6:100863000-100894600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:100864000-100887000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:100867400-100889000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:100869000-100882200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr6:100869400-100882200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:100873600-100875600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:100874000-100875000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:100874000-100875400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr6:100874200-100874800	Enhancers	H9 Cell Line	embryonic stem cell
13	chr6:100874200-100874800	Enhancers	HSMMtube	muscle
14	chr6:100874200-100875000	Enhancers	H1 Cell Line	embryonic stem cell
15	chr6:100874200-100875400	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr6:100874200-100875600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:100874200-100875600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:100874200-100875600	Enhancers	HSMM	muscle
19	chr6:100874400-100875000	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr6:100874400-100875400	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr6:100874600-100874800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
22	chr6:100874600-100875000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
23	chr6:100874600-100875200	Enhancers	HUES64 Cell Line	embryonic stem cell

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