Variant report

Variant	rs73683939
Chromosome Location	chr7:28065909-28065910
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73683935	0.95[AFR][1000 genomes]
rs73683949	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1030685	chr7:27844038-28177301	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:28045400-28076200	Weak transcription	Gastric	stomach
2	chr7:28054800-28073400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr7:28055800-28072400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:28056200-28066400	Weak transcription	Esophagus	oesophagus
5	chr7:28056200-28072400	Weak transcription	Spleen	Spleen
6	chr7:28056400-28072200	Weak transcription	Primary B cells from peripheral blood	blood
7	chr7:28057800-28066000	Weak transcription	Brain Substantia Nigra	brain
8	chr7:28057800-28076200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr7:28058000-28076200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr7:28059000-28069600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr7:28060000-28076000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr7:28060200-28066000	Weak transcription	Fetal Stomach	stomach
13	chr7:28060200-28073800	Weak transcription	NHLF	lung
14	chr7:28060200-28076000	Weak transcription	HUVEC	blood vessel
15	chr7:28060400-28066000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr7:28060400-28066000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr7:28060400-28073800	Weak transcription	Liver	Liver
18	chr7:28060600-28068200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr7:28060600-28075200	Weak transcription	HMEC	breast
20	chr7:28060600-28076600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr7:28060800-28072400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr7:28060800-28072800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr7:28060800-28073000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr7:28060800-28075600	Weak transcription	HSMMtube	muscle
25	chr7:28061000-28067800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr7:28061000-28069400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr7:28061400-28076000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr7:28062000-28076400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr7:28062800-28067800	Weak transcription	Primary B cells from cord blood	blood
30	chr7:28063000-28076400	Enhancers	Colon Smooth Muscle	Colon
31	chr7:28064200-28068200	Enhancers	Rectal Smooth Muscle	rectum
32	chr7:28064400-28066600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr7:28064600-28068200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr7:28064600-28072400	Weak transcription	Small Intestine	intestine
35	chr7:28064800-28066400	Weak transcription	NHDF-Ad	bronchial
36	chr7:28064800-28066600	Weak transcription	A549	lung
37	chr7:28064800-28068000	Weak transcription	Osteobl	bone
38	chr7:28064800-28071200	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr7:28064800-28072400	Weak transcription	Right Ventricle	heart
40	chr7:28064800-28076800	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr7:28065000-28068600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr7:28065400-28066400	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr7:28065400-28066600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr7:28065600-28066000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr7:28065600-28066000	Weak transcription	Right Atrium	heart
46	chr7:28065600-28066200	Enhancers	Primary T cells from cord blood	blood
47	chr7:28065600-28066200	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr7:28065600-28066800	Enhancers	Fetal Muscle Leg	muscle
49	chr7:28065600-28067000	Enhancers	Left Ventricle	heart
50	chr7:28065800-28066200	Enhancers	Brain Anterior Caudate	brain

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