Variant report

Variant	rs73684602
Chromosome Location	chr8:61739560-61739561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:61737808..61740044-chr8:61741202..61743942,2	K562	blood:
2	chr8:61738648..61741057-chr8:61768794..61770353,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171316	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73685654	1.00[AFR][1000 genomes]
rs73688303	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv526196	chr8:61593569-61877623	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1019330	chr8:61697104-61744335	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv890946	chr8:61726879-61802076	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	esv1795586	chr8:61733174-61863906	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61691200-61742800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr8:61695000-61743000	Weak transcription	Placenta	Placenta
3	chr8:61704400-61745000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:61705600-61742400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr8:61705600-61742600	Weak transcription	Spleen	Spleen
6	chr8:61705600-61743000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr8:61705600-61743000	Weak transcription	Fetal Stomach	stomach
8	chr8:61705600-61743000	Weak transcription	Lung	lung
9	chr8:61705800-61742400	Weak transcription	Gastric	stomach
10	chr8:61705800-61755000	Weak transcription	Psoas Muscle	Psoas
11	chr8:61711000-61742400	Weak transcription	Pancreas	Pancrea
12	chr8:61711800-61743800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr8:61718200-61740400	Weak transcription	Brain Angular Gyrus	brain
14	chr8:61718200-61749400	Weak transcription	Fetal Kidney	kidney
15	chr8:61718800-61781000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr8:61720400-61742400	Weak transcription	NH-A	brain
17	chr8:61720600-61742400	Weak transcription	Fetal Brain Female	brain
18	chr8:61720800-61752600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr8:61722000-61742800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr8:61723400-61741400	Weak transcription	NHEK	skin
21	chr8:61723800-61740200	Weak transcription	Brain Anterior Caudate	brain
22	chr8:61724400-61740200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr8:61726800-61749600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr8:61728200-61749000	Weak transcription	Colon Smooth Muscle	Colon
25	chr8:61728600-61740000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr8:61728800-61741000	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr8:61728800-61749400	Weak transcription	Small Intestine	intestine
28	chr8:61729000-61740800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr8:61729200-61742200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr8:61729200-61751600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
31	chr8:61729600-61742400	Weak transcription	Stomach Smooth Muscle	stomach
32	chr8:61729800-61743000	Weak transcription	K562	blood
33	chr8:61730200-61740200	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr8:61730200-61740200	Weak transcription	Primary hematopoietic stem cells	blood
35	chr8:61730200-61741600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr8:61730200-61743000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr8:61730800-61742400	Weak transcription	Colonic Mucosa	Colon
38	chr8:61731800-61751400	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr8:61732000-61740400	Strong transcription	Primary B cells from cord blood	blood
40	chr8:61732000-61752000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr8:61732200-61740200	Strong transcription	Primary B cells from peripheral blood	blood
42	chr8:61732400-61740400	Weak transcription	Brain Cingulate Gyrus	brain
43	chr8:61733000-61743000	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr8:61733200-61750800	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr8:61733600-61740000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr8:61733600-61740400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr8:61733800-61740000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr8:61734000-61740000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr8:61734000-61740200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr8:61734000-61741000	Weak transcription	Adipose Nuclei	Adipose

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