Variant report

Variant	rs73688575
Chromosome Location	chr8:87072500-87072501
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:87067028..87069313-chr8:87070292..87072974,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11997312	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55638186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55875100	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57222805	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57950594	1.00[AMR][1000 genomes]
rs59388462	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60405506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61342746	1.00[AMR][1000 genomes]
rs73688551	1.00[AMR][1000 genomes]
rs73688557	1.00[AMR][1000 genomes]
rs73688569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73688570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73688572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73688573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73688588	0.86[AFR][1000 genomes]
rs73688589	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73688590	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73688591	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73688600	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691712	1.00[AMR][1000 genomes]
rs73691717	1.00[AMR][1000 genomes]
rs73691718	1.00[AMR][1000 genomes]
rs73691729	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428204	chr8:86405478-87312208	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv529563	chr8:86467090-87381984	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
3	nsv1028959	chr8:86835367-87142383	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv891146	chr8:86841229-87083747	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv932023	chr8:86845979-87490694	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
6	nsv891147	chr8:86886950-87333968	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv1034721	chr8:86977250-87131151	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv891148	chr8:86987886-87149808	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv891149	chr8:87023306-87167184	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	nsv1034855	chr8:87040075-87168730	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87063600-87074800	Weak transcription	Fetal Stomach	stomach
2	chr8:87070400-87074000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:87070600-87075600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:87071400-87073800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr8:87071600-87073400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr8:87071600-87073800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr8:87071600-87074000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr8:87071800-87073400	Enhancers	H9 Cell Line	embryonic stem cell
9	chr8:87071800-87073400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr8:87072000-87072800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
11	chr8:87072000-87073200	Enhancers	Fetal Heart	heart
12	chr8:87072200-87072600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
13	chr8:87072400-87072600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
14	chr8:87072400-87072800	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links