Variant report
| Variant | rs73688653 |
|---|---|
| Chromosome Location | chr8:85894446-85894447 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:85891336..85894175-chr8:85894387..85896944,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| IGJP1 | TF binding region |
| ENSG00000253655 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11998485 | 1.00[EUR][1000 genomes] |
| rs13439382 | 0.84[EUR][1000 genomes] |
| rs1427048 | 0.84[EUR][1000 genomes] |
| rs16913440 | 0.84[EUR][1000 genomes] |
| rs16913450 | 0.84[EUR][1000 genomes] |
| rs16913528 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55856261 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55861638 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs56147296 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56165243 | 0.84[EUR][1000 genomes] |
| rs56313699 | 0.84[EUR][1000 genomes] |
| rs59576345 | 0.84[EUR][1000 genomes] |
| rs6991900 | 0.84[EUR][1000 genomes] |
| rs6992900 | 0.80[EUR][1000 genomes] |
| rs7013566 | 0.80[EUR][1000 genomes] |
| rs73688633 | 0.84[EUR][1000 genomes] |
| rs73688636 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs73688637 | 1.00[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs73688638 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs73688639 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3481417 | chr8:85279453-86145229 | Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
| 2 | esv3481418 | chr8:85279453-86145229 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
| 3 | nsv427823 | chr8:85538522-86009068 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 4 | nsv428203 | chr8:85834033-86009068 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:85890400-85894600 | Weak transcription | Monocytes-CD14+_RO01746 | blood |
| 2 | chr8:85894000-85894800 | Weak transcription | Primary monocytes fromperipheralblood | blood |
