Variant report

Variant	rs73688679
Chromosome Location	chr8:86059265-86059266
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:86059254..86060308-chr8:86202052..86203050,5	MCF-7	breast:
2	chr8:86058255..86059927-chr8:86097953..86100720,2	MCF-7	breast:
3	chr8:86058766..86061369-chr8:86087811..86090336,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133740	Chromatin interaction
ENSG00000260493	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16913589	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16913598	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16913602	1.00[EUR][1000 genomes]
rs4150863	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4150895	0.91[AMR][1000 genomes]
rs4150896	0.91[AMR][1000 genomes]
rs4150921	0.91[AMR][1000 genomes]
rs55650873	1.00[EUR][1000 genomes]
rs55654684	1.00[EUR][1000 genomes]
rs56256461	1.00[EUR][1000 genomes]
rs56366347	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73261808	0.95[EUR][1000 genomes]
rs73261811	0.95[EUR][1000 genomes]
rs73688673	1.00[EUR][1000 genomes]
rs73688675	1.00[EUR][1000 genomes]
rs7830390	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3481417	chr8:85279453-86145229	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3481418	chr8:85279453-86145229	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv1797206	chr8:86023237-86060072	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	esv1800945	chr8:86030101-86060072	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:86020400-86062600	Weak transcription	Pancreas	Pancrea
2	chr8:86021200-86059600	Weak transcription	Fetal Brain Male	brain
3	chr8:86033000-86059800	Weak transcription	Fetal Thymus	thymus
4	chr8:86037000-86061200	Weak transcription	Brain Anterior Caudate	brain
5	chr8:86040600-86062000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:86044200-86060000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:86046600-86064800	Weak transcription	Thymus	Thymus
8	chr8:86046600-86065800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr8:86049400-86065800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr8:86050800-86061400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:86051000-86059800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr8:86054200-86059800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr8:86055000-86059800	Weak transcription	Primary hematopoietic stem cells	blood
14	chr8:86055000-86062400	Weak transcription	Dnd41	blood
15	chr8:86055800-86059600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr8:86058400-86060000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr8:86058600-86060000	Enhancers	K562	blood
18	chr8:86058800-86060000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr8:86058800-86060200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr8:86059000-86059400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr8:86059000-86059400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr8:86059000-86059400	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr8:86059000-86060400	Enhancers	HUES48 Cell Line	embryonic stem cell

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