Variant report

Variant	rs73688884
Chromosome Location	chr7:33535019-33535020
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs56357411	1.00[AMR][1000 genomes]
rs56842869	1.00[AMR][1000 genomes]
rs57591325	1.00[AMR][1000 genomes]
rs73688166	1.00[AMR][1000 genomes]
rs73688170	1.00[AMR][1000 genomes]
rs73688877	1.00[AMR][1000 genomes]
rs73688885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73689610	1.00[AMR][1000 genomes]
rs73689611	1.00[AMR][1000 genomes]
rs73689618	1.00[AMR][1000 genomes]
rs73689625	1.00[AMR][1000 genomes]
rs7801765	1.00[AMR][1000 genomes]
rs9768576	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830944	chr7:33389892-33549882	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv933237	chr7:33470390-33574046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv933018	chr7:33506325-33707270	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv830945	chr7:33526648-33670592	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33530600-33535200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr7:33530800-33535400	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr7:33531400-33535800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr7:33531600-33535800	Enhancers	H1 Cell Line	embryonic stem cell
5	chr7:33533000-33535400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr7:33533600-33535200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:33533600-33535800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:33533600-33536000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr7:33533800-33535600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr7:33533800-33535800	Enhancers	HSMMtube	muscle
11	chr7:33533800-33540000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr7:33533800-33543800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr7:33534200-33535200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr7:33534200-33535400	Enhancers	NHDF-Ad	bronchial
15	chr7:33534200-33552400	Weak transcription	Pancreas	Pancrea
16	chr7:33534400-33535400	Enhancers	Colon Smooth Muscle	Colon
17	chr7:33534400-33535400	Enhancers	Fetal Heart	heart
18	chr7:33534400-33535400	Enhancers	NH-A	brain
19	chr7:33534400-33535600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr7:33534400-33535800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr7:33534400-33537800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr7:33534600-33535200	Enhancers	H9 Cell Line	embryonic stem cell
23	chr7:33534600-33535200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr7:33534600-33535800	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr7:33534800-33535200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr7:33534800-33535200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr7:33534800-33535200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr7:33534800-33535200	Enhancers	Aorta	Aorta
29	chr7:33534800-33535200	Enhancers	Fetal Muscle Leg	muscle
30	chr7:33534800-33535200	Enhancers	Psoas Muscle	Psoas
31	chr7:33534800-33535200	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr7:33534800-33535200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
33	chr7:33534800-33535400	Enhancers	HSMM	muscle
34	chr7:33535000-33535200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr7:33535000-33535200	Enhancers	Osteobl	bone
36	chr7:33535000-33536800	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr7:33535000-33537000	Enhancers	Muscle Satellite Cultured Cells	--
38	chr7:33535000-33540000	Weak transcription	Left Ventricle	heart
39	chr7:33535000-33540200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr7:33535000-33541000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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