Variant report

Variant	rs73689257
Chromosome Location	chr7:39714933-39714934
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:39705505..39707124-chr7:39714403..39716218,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6943083	0.98[AFR][1000 genomes]
rs6976303	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508451	chr7:39660784-39787222	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv887971	chr7:39662268-39745775	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv887972	chr7:39666267-39733688	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39672200-39722800	Weak transcription	Hela-S3	cervix
2	chr7:39680000-39721600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr7:39680800-39716400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr7:39682800-39722000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr7:39683400-39716600	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr7:39687400-39715000	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr7:39700000-39728200	Weak transcription	Liver	Liver
8	chr7:39701200-39718400	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr7:39701800-39716400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr7:39701800-39720800	Weak transcription	Lung	lung
11	chr7:39701800-39721200	Weak transcription	Thymus	Thymus
12	chr7:39701800-39722600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr7:39701800-39739400	Weak transcription	Esophagus	oesophagus
14	chr7:39702000-39716600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr7:39702000-39727400	Weak transcription	Fetal Intestine Large	intestine
16	chr7:39702200-39716400	Weak transcription	Primary B cells from peripheral blood	blood
17	chr7:39703800-39716600	Weak transcription	Fetal Muscle Leg	muscle
18	chr7:39704200-39716400	Weak transcription	Fetal Intestine Small	intestine
19	chr7:39704200-39716600	Weak transcription	Psoas Muscle	Psoas
20	chr7:39704400-39716200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr7:39704400-39717800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr7:39704800-39718600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr7:39705200-39716200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr7:39706400-39722800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr7:39706600-39716200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr7:39707200-39716000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr7:39707200-39727200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr7:39707200-39730000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr7:39707400-39718400	Weak transcription	Primary hematopoietic stem cells	blood
30	chr7:39707400-39718800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr7:39707400-39721000	Weak transcription	Right Ventricle	heart
32	chr7:39707800-39716000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr7:39708000-39718000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr7:39708000-39718600	Weak transcription	Osteobl	bone
35	chr7:39708000-39720400	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr7:39708000-39721400	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr7:39708000-39722400	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr7:39708200-39720400	Weak transcription	NHDF-Ad	bronchial
39	chr7:39709600-39716200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr7:39710200-39716600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr7:39710200-39722600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr7:39710400-39721800	Weak transcription	Stomach Smooth Muscle	stomach
43	chr7:39710800-39722800	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr7:39711600-39716200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr7:39712000-39722600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr7:39712200-39716600	Weak transcription	HSMM	muscle
47	chr7:39712200-39722600	Weak transcription	NHEK	skin
48	chr7:39712200-39722800	Weak transcription	HMEC	breast
49	chr7:39712600-39716600	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr7:39712600-39716600	Weak transcription	HUVEC	blood vessel

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