Variant report

Variant	rs73690892
Chromosome Location	chr8:66555679-66555680
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr8:66555657-66557626	K562	blood:	n/a	n/a
2	CTCF	chr8:66555564-66557953	A549	lung:	n/a	chr8:66557373-66557386 chr8:66557371-66557387 chr8:66556142-66556151 chr8:66557370-66557388
3	POLR2A	chr8:66555359-66557962	K562	blood:	n/a	n/a
4	JUND	chr8:66555381-66557678	K562	blood:	n/a	chr8:66556224-66556233 chr8:66556939-66556948
5	TBL1XR1	chr8:66555456-66556189	K562	blood:	n/a	n/a
6	CBX3	chr8:66555642-66557679	K562	blood:	n/a	n/a
7	EP300	chr8:66555650-66557731	K562	blood:	n/a	chr8:66557475-66557491 chr8:66557367-66557376 chr8:66557364-66557373
8	MXI1	chr8:66555317-66557883	SK-N-SH	brain:	n/a	n/a
9	POLR2A	chr8:66555670-66557610	K562	blood:	n/a	n/a
10	ZNF143	chr8:66555656-66556821	K562	blood:	n/a	n/a
11	MXI1	chr8:66555619-66557878	IMR90	lung:	n/a	n/a
12	MYC	chr8:66555663-66557649	K562	blood:	n/a	chr8:66556410-66556421 chr8:66556410-66556421 chr8:66556411-66556420 chr8:66556411-66556421
13	SMC3	chr8:66555263-66557695	SK-N-SH	brain:	n/a	chr8:66557372-66557386 chr8:66557376-66557386
14	ELF1	chr8:66555679-66556437	K562	blood:	n/a	n/a
15	GATA1	chr8:66555439-66557411	PBDE	blood:	n/a	n/a
16	MAX	chr8:66555666-66557652	K562	blood:	n/a	chr8:66556410-66556421 chr8:66556410-66556421 chr8:66556411-66556420 chr8:66556411-66556421

No.	Distal block	Cell Line	Cell type
1	chr8:66540570..66542467-chr8:66555055..66556755,2	MCF-7	breast:
2	chr8:66544310..66548208-chr8:66554670..66559350,8	MCF-7	breast:
3	chr8:66543941..66549000-chr8:66554498..66559366,10	MCF-7	breast:
4	chr8:66555236..66558809-chr8:66619620..66621771,3	K562	blood:

Variant related genes	Relation type
MTFR1	TF binding region
ENSG00000104442	Chromatin interaction
ENSG00000066855	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10105283	1.00[EUR][1000 genomes]
rs10105501	1.00[EUR][1000 genomes]
rs10957362	1.00[EUR][1000 genomes]
rs28515659	1.00[EUR][1000 genomes]
rs28734105	1.00[EUR][1000 genomes]
rs7004181	1.00[EUR][1000 genomes]
rs7008157	1.00[EUR][1000 genomes]
rs73690883	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761434	chr8:65578467-66567678	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66546400-66556000	Weak transcription	Small Intestine	intestine
2	chr8:66547000-66555800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:66547400-66556000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr8:66555000-66555800	Weak transcription	Spleen	Spleen
5	chr8:66555200-66556000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:66555200-66556000	Enhancers	Lung	lung
7	chr8:66555400-66555800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr8:66555400-66555800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:66555400-66555800	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr8:66555400-66555800	Enhancers	Liver	Liver
11	chr8:66555400-66555800	Weak transcription	Pancreas	Pancrea
12	chr8:66555400-66555800	Enhancers	Stomach Mucosa	stomach
13	chr8:66555400-66555800	Active TSS	HepG2	liver
14	chr8:66555400-66556000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
15	chr8:66555400-66556000	Enhancers	Primary B cells from peripheral blood	blood
16	chr8:66555400-66556000	Bivalent/Poised TSS	Primary T cells from cord blood	blood
17	chr8:66555400-66556200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
18	chr8:66555400-66556400	Flanking Active TSS	Duodenum Mucosa	Duodenum
19	chr8:66555400-66556800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr8:66555400-66558200	Active TSS	ES-I3 Cell Line	embryonic stem cell
21	chr8:66555400-66558600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr8:66555600-66555800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr8:66555600-66555800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
24	chr8:66555600-66555800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
25	chr8:66555600-66555800	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr8:66555600-66555800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
27	chr8:66555600-66555800	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr8:66555600-66555800	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr8:66555600-66555800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr8:66555600-66555800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr8:66555600-66555800	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr8:66555600-66555800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr8:66555600-66555800	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
34	chr8:66555600-66555800	Active TSS	Brain Hippocampus Middle	brain
35	chr8:66555600-66555800	Enhancers	Brain Inferior Temporal Lobe	brain
36	chr8:66555600-66555800	Enhancers	Brain Substantia Nigra	brain
37	chr8:66555600-66555800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr8:66555600-66555800	Bivalent Enhancer	Fetal Brain Male	brain
39	chr8:66555600-66555800	Active TSS	Fetal Brain Female	brain
40	chr8:66555600-66555800	Bivalent/Poised TSS	Fetal Heart	heart
41	chr8:66555600-66555800	Active TSS	Rectal Mucosa Donor 29	rectum
42	chr8:66555600-66555800	Active TSS	Rectal Smooth Muscle	rectum
43	chr8:66555600-66555800	Enhancers	Dnd41	blood
44	chr8:66555600-66555800	Enhancers	GM12878-XiMat	blood
45	chr8:66555600-66555800	Active TSS	NH-A	brain
46	chr8:66555600-66555800	Flanking Active TSS	NHDF-Ad	bronchial
47	chr8:66555600-66555800	Enhancers	NHLF	lung
48	chr8:66555600-66556000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
49	chr8:66555600-66556000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr8:66555600-66556000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links