Variant report

Variant	rs73690893
Chromosome Location	chr8:66558270-66558271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:66544310..66548208-chr8:66554670..66559350,8	MCF-7	breast:
2	chr8:66557768..66559368-chr8:66571050..66573151,2	K562	blood:
3	chr8:66543941..66549000-chr8:66554498..66559366,10	MCF-7	breast:
4	chr8:66557301..66560077-chr8:66580234..66581875,2	K562	blood:
5	chr8:66556998..66559111-chr8:66700750..66703642,2	K562	blood:
6	chr8:66555236..66558809-chr8:66619620..66621771,3	K562	blood:
7	chr8:66555940..66558809-chr8:66619620..66621771,2	K562	blood:
8	chr8:66557005..66560077-chr8:66579109..66581875,3	K562	blood:
9	chr8:66557149..66559790-chr8:66561450..66563071,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000205268	Chromatin interaction
ENSG00000104442	Chromatin interaction
ENSG00000066855	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs58098669	1.00[AFR][1000 genomes]
rs61063663	1.00[AFR][1000 genomes]
rs61079148	1.00[AFR][1000 genomes]
rs73690886	1.00[AFR][1000 genomes]
rs73690890	1.00[AFR][1000 genomes]
rs73690898	1.00[AFR][1000 genomes]
rs73690899	1.00[AFR][1000 genomes]
rs73690900	1.00[AFR][1000 genomes]
rs73690901	1.00[AFR][1000 genomes]
rs73693403	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761434	chr8:65578467-66567678	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66555400-66558600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:66556000-66558600	Active TSS	iPS-20b Cell Line	embryonic stem cell
3	chr8:66556600-66558400	Active TSS	K562	blood
4	chr8:66556600-66558600	Active TSS	Muscle Satellite Cultured Cells	--
5	chr8:66556800-66558400	Active TSS	HMEC	breast
6	chr8:66557600-66558400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr8:66557600-66558400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:66557600-66558400	Flanking Active TSS	HUVEC	blood vessel
9	chr8:66557600-66558600	Flanking Active TSS	Dnd41	blood
10	chr8:66557800-66558400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:66557800-66558400	Enhancers	Stomach Mucosa	stomach
12	chr8:66557800-66558600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr8:66557800-66558600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr8:66557800-66558600	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr8:66557800-66558600	Enhancers	Fetal Heart	heart
16	chr8:66557800-66558600	Enhancers	Small Intestine	intestine
17	chr8:66557800-66558600	Flanking Active TSS	GM12878-XiMat	blood
18	chr8:66557800-66558800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr8:66557800-66559000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr8:66557800-66559400	Enhancers	Primary T cells from cord blood	blood
21	chr8:66557800-66559400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr8:66557800-66564400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr8:66558000-66558400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr8:66558000-66558400	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr8:66558000-66558400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
26	chr8:66558000-66558400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr8:66558000-66558400	Weak transcription	Brain Hippocampus Middle	brain
28	chr8:66558000-66558400	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr8:66558000-66558600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr8:66558000-66558600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr8:66558000-66558600	Enhancers	Brain Cingulate Gyrus	brain
32	chr8:66558000-66558600	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr8:66558000-66558800	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr8:66558000-66559000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr8:66558000-66559000	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr8:66558000-66559400	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr8:66558000-66559400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr8:66558000-66559600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr8:66558000-66559600	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr8:66558000-66559600	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr8:66558000-66561000	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr8:66558000-66564200	Weak transcription	Psoas Muscle	Psoas
43	chr8:66558000-66565000	Weak transcription	Pancreas	Pancrea
44	chr8:66558000-66565200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr8:66558000-66567000	Weak transcription	Gastric	stomach
46	chr8:66558000-66567200	Weak transcription	Adipose Nuclei	Adipose
47	chr8:66558000-66567400	Weak transcription	Ovary	ovary
48	chr8:66558000-66568800	Weak transcription	Fetal Intestine Small	intestine
49	chr8:66558000-66569400	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr8:66558000-66569600	Weak transcription	Esophagus	oesophagus

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