Variant report

Variant	rs73691013
Chromosome Location	chr8:85516017-85516018
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs55893605	1.00[AMR][1000 genomes]
rs58066601	1.00[AMR][1000 genomes]
rs58674714	1.00[AMR][1000 genomes]
rs59001482	1.00[AMR][1000 genomes]
rs73688496	1.00[AMR][1000 genomes]
rs73691005	0.85[AFR][1000 genomes]
rs73691007	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3481417	chr8:85279453-86145229	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3481418	chr8:85279453-86145229	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85498200-85516400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:85513200-85516200	Weak transcription	Fetal Brain Male	brain
3	chr8:85513600-85516400	Weak transcription	Fetal Brain Female	brain
4	chr8:85514800-85516800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:85514800-85517000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr8:85514800-85517000	Enhancers	Liver	Liver
7	chr8:85515000-85516800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:85515000-85518000	Weak transcription	Fetal Kidney	kidney
9	chr8:85515800-85516600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr8:85515800-85516600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr8:85515800-85517000	Enhancers	Fetal Intestine Large	intestine
12	chr8:85515800-85517000	Enhancers	Fetal Intestine Small	intestine
13	chr8:85515800-85517200	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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