Variant report

Variant	rs736917
Chromosome Location	chr5:36728340-36728341
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10941315	0.89[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12515405	0.85[ASN][1000 genomes]
rs13157870	0.82[ASN][1000 genomes]
rs13162139	0.87[ASN][1000 genomes]
rs13177532	0.83[ASN][1000 genomes]
rs2886219	0.90[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs34265144	0.82[ASN][1000 genomes]
rs6892066	0.86[CHB][hapmap];0.82[CHD][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv830263	chr5:36576504-36755093	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36725800-36729200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr5:36725800-36729600	Weak transcription	Fetal Muscle Leg	muscle
3	chr5:36726000-36729200	Weak transcription	Primary B cells from peripheral blood	blood
4	chr5:36727600-36728400	Bivalent/Poised TSS	K562	blood
5	chr5:36728200-36728400	Flanking Bivalent TSS/Enh	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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