Variant report

Variant	rs73691974
Chromosome Location	chr7:38147295-38147296
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:38146750..38147644-chr7:38255037..38256019,2	K562	blood:
2	chr7:38146737..38148304-chr7:38261624..38262803,9	K562	blood:
3	chr7:38146965..38147587-chr7:38385316..38385987,2	MCF-7	breast:
4	chr7:38146765..38147691-chr7:38255215..38255987,3	MCF-7	breast:
5	chr7:37939928..37942634-chr7:38145732..38147603,2	K562	blood:
6	chr7:38147106..38147689-chr7:38374934..38375856,4	MCF-7	breast:
7	chr7:37940575..37941460-chr7:38146776..38147514,2	K562	blood:
8	chr7:38145207..38147736-chr7:38358126..38359354,12	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10227310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10253383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10272947	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12113670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55683740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56253086	0.85[AFR][1000 genomes]
rs73691930	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8074	chr7:37865340-38210087	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv887962	chr7:38093233-38203341	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38147200-38147800	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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