Variant report

Variant	rs73692552
Chromosome Location	chr8:68514537-68514538
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:68513707..68516247-chr8:68531508..68533554,2	MCF-7	breast:
2	chr8:68255191..68258102-chr8:68513890..68515393,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271966	Chromatin interaction
ENSG00000066777	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2170423	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2170424	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55883952	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6999787	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73692156	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752263	chr8:68170946-68788493	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1024135	chr8:68235792-68629789	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv539642	chr8:68235792-68629789	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv2752264	chr8:68244546-68647201	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1032986	chr8:68468044-68789883	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68512200-68514600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr8:68513600-68514600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:68513600-68514600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr8:68513800-68514600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr8:68513800-68514600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr8:68513800-68514800	Weak transcription	Fetal Stomach	stomach
7	chr8:68514000-68514800	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr8:68514000-68514800	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr8:68514200-68514600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr8:68514200-68514600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr8:68514200-68514600	Enhancers	Dnd41	blood
12	chr8:68514200-68517200	Enhancers	Primary hematopoietic stem cells	blood
13	chr8:68514400-68514600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr8:68514400-68514600	Enhancers	Adipose Nuclei	Adipose
15	chr8:68514400-68514600	Enhancers	HSMMtube	muscle
16	chr8:68514400-68514800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:68514400-68515200	Enhancers	Colon Smooth Muscle	Colon
18	chr8:68514400-68515400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr8:68514400-68516400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr8:68514400-68520600	Enhancers	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links