Variant report

Variant	rs73692990
Chromosome Location	chr8:94991326-94991327
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11990284	0.92[AFR][1000 genomes]
rs11990491	1.00[AMR][1000 genomes]
rs11997800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59075005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59138229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61495699	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692985	0.92[AFR][1000 genomes]
rs73692989	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754970	chr8:94675324-94991724	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv518975	chr8:94985722-94992958	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:94989600-94994400	Enhancers	Fetal Intestine Small	intestine
2	chr8:94990800-94992000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:94991000-94991400	Enhancers	HMEC	breast
4	chr8:94991200-94991800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr8:94991200-94992600	Enhancers	Gastric	stomach
6	chr8:94991200-94993000	Enhancers	Pancreas	Pancrea
7	chr8:94991200-94993200	Enhancers	Stomach Mucosa	stomach
8	chr8:94991200-94993600	Enhancers	Ovary	ovary
9	chr8:94991200-94994400	Enhancers	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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