Variant report

Variant	rs73693325
Chromosome Location	chr8:78045217-78045218
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs55976934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58858180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693314	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693316	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693318	0.88[AFR][1000 genomes]
rs73693319	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891045	chr8:77998659-78477561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1020007	chr8:78021376-78059834	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:78045000-78045400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr8:78045000-78045400	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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