Variant report

Variant	rs73693904
Chromosome Location	chr8:67032099-67032100
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:67024509..67028261-chr8:67030729..67035819,11	K562	blood:
2	chr8:67025210..67028035-chr8:67030622..67035335,5	K562	blood:
3	chr8:67030286..67032374-chr8:67034685..67037786,3	K562	blood:
4	chr8:67029942..67032233-chr8:67040282..67042706,2	MCF-7	breast:
5	chr8:67026046..67028476-chr8:67029113..67032451,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253190	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16932401	1.00[AMR][1000 genomes]
rs16932421	1.00[AMR][1000 genomes]
rs73691281	1.00[AMR][1000 genomes]
rs73691299	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67026200-67032600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:67027200-67032200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:67027200-67032200	Weak transcription	Left Ventricle	heart
4	chr8:67027200-67035800	Weak transcription	Psoas Muscle	Psoas
5	chr8:67027200-67036200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr8:67027200-67036200	Weak transcription	Right Ventricle	heart
7	chr8:67027400-67032200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:67027400-67032600	Weak transcription	Hela-S3	cervix
9	chr8:67027400-67035600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr8:67027600-67032400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr8:67027800-67032200	Weak transcription	NH-A	brain
12	chr8:67027800-67033800	Weak transcription	Fetal Muscle Leg	muscle
13	chr8:67027800-67036400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr8:67028000-67032200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr8:67028000-67032400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr8:67028000-67032600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr8:67028000-67032600	Weak transcription	Placenta	Placenta
18	chr8:67028000-67032800	Weak transcription	Adipose Nuclei	Adipose
19	chr8:67028000-67032800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr8:67028000-67033600	Weak transcription	HUVEC	blood vessel
21	chr8:67028000-67034200	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr8:67028000-67036400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr8:67028200-67032200	Weak transcription	NHDF-Ad	bronchial
24	chr8:67028200-67032800	Weak transcription	Liver	Liver
25	chr8:67028200-67033200	Weak transcription	GM12878-XiMat	blood
26	chr8:67028200-67033400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr8:67028200-67036200	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr8:67030600-67032200	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr8:67030600-67032800	Enhancers	A549	lung
30	chr8:67030600-67034000	Enhancers	K562	blood
31	chr8:67030600-67034800	Enhancers	HSMM	muscle
32	chr8:67030800-67033000	Enhancers	Fetal Heart	heart
33	chr8:67030800-67033200	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr8:67030800-67034200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr8:67031000-67034200	Enhancers	HSMMtube	muscle
36	chr8:67031000-67034600	Enhancers	HMEC	breast
37	chr8:67031000-67034600	Enhancers	NHLF	lung
38	chr8:67031200-67032800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr8:67031400-67037400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr8:67031600-67032600	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr8:67031600-67038000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr8:67031800-67032200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr8:67031800-67033000	Weak transcription	Primary hematopoietic stem cells	blood
44	chr8:67031800-67033600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr8:67031800-67034000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr8:67031800-67034200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr8:67031800-67034400	Enhancers	NHEK	skin
48	chr8:67031800-67036400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr8:67032000-67033000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr8:67032000-67038800	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links