Variant report

Variant	rs73695571
Chromosome Location	chr8:95712436-95712437
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:95705965..95708833-chr8:95711064..95712793,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11989790	0.87[AMR][1000 genomes]
rs55862449	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56078107	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56147836	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56770571	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57531232	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57814850	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58369514	0.87[AMR][1000 genomes]
rs58855099	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59847618	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60445949	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60712208	0.87[AMR][1000 genomes]
rs73695513	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73695514	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73695515	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73695517	0.94[AFR][1000 genomes]
rs73695518	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73695519	0.87[AMR][1000 genomes]
rs73695520	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73695521	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73695523	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73695524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73695567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73695569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73695570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73695572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73695573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73695576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73695577	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73695578	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95656400-95713000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
2	chr8:95680600-95718400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr8:95690600-95722600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr8:95698600-95714200	Weak transcription	Fetal Kidney	kidney
5	chr8:95700400-95719800	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr8:95702400-95719800	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr8:95702400-95720400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr8:95702600-95719400	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr8:95702600-95720200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr8:95702800-95720200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr8:95703200-95716800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr8:95704200-95719400	Strong transcription	H1 Cell Line	embryonic stem cell
13	chr8:95704400-95714200	Strong transcription	Duodenum Mucosa	Duodenum
14	chr8:95705000-95714400	Weak transcription	Gastric	stomach
15	chr8:95705600-95714200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr8:95705800-95719800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr8:95706000-95714400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr8:95706000-95718800	Strong transcription	Rectal Mucosa Donor 31	rectum
19	chr8:95706200-95720600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr8:95706600-95714600	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr8:95706600-95717800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr8:95707000-95714000	Strong transcription	NHEK	skin
23	chr8:95707800-95718800	Strong transcription	H9 Cell Line	embryonic stem cell
24	chr8:95708200-95713000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
25	chr8:95708200-95714600	Strong transcription	Fetal Intestine Large	intestine
26	chr8:95708400-95712800	Strong transcription	HMEC	breast
27	chr8:95709600-95712800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
28	chr8:95710600-95718800	Weak transcription	Rectal Smooth Muscle	rectum
29	chr8:95710800-95712800	Enhancers	GM12878-XiMat	blood
30	chr8:95710800-95722200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr8:95711000-95717800	Weak transcription	Lung	lung
32	chr8:95711200-95718400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr8:95711600-95712800	Strong transcription	Pancreas	Pancrea
34	chr8:95711600-95713000	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr8:95711600-95717200	Strong transcription	Fetal Intestine Small	intestine
36	chr8:95712200-95712600	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr8:95712200-95712600	Strong transcription	Sigmoid Colon	Sigmoid Colon
38	chr8:95712200-95712800	Strong transcription	Colonic Mucosa	Colon
39	chr8:95712200-95712800	Strong transcription	Esophagus	oesophagus
40	chr8:95712200-95712800	Strong transcription	Placenta	Placenta
41	chr8:95712200-95712800	Strong transcription	Stomach Mucosa	stomach

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