Variant report

Variant	rs73697746
Chromosome Location	chr7:50862722-50862723
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10227996	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10261151	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10267306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152128	0.85[AMR][1000 genomes]
rs59447685	0.85[AMR][1000 genomes]
rs720845	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv824091	chr7:50828682-50885984	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv538835	chr7:50839656-50867735	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv824092	chr7:50846084-50865531	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50861000-50867400	Weak transcription	Spleen	Spleen
2	chr7:50861800-50863000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:50861800-50863000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr7:50861800-50863400	Enhancers	HSMMtube	muscle
5	chr7:50861800-50864200	Enhancers	K562	blood
6	chr7:50861800-50867600	Weak transcription	Psoas Muscle	Psoas
7	chr7:50862000-50863000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr7:50862200-50863200	Weak transcription	Pancreas	Pancrea
9	chr7:50862200-50863200	Weak transcription	A549	lung
10	chr7:50862200-50867400	Weak transcription	Left Ventricle	heart
11	chr7:50862200-50889000	Weak transcription	Right Atrium	heart
12	chr7:50862400-50862800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr7:50862400-50863000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links