Variant report

Variant	rs73698006
Chromosome Location	chr7:50254385-50254386
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:50253030..50255568-chr7:50314396..50316828,2	K562	blood:
2	chr7:50253301..50255732-chr7:50349910..50352191,2	K562	blood:
3	chr7:50251815..50254720-chr7:50262082..50263652,2	K562	blood:

Variant related genes	Relation type
ENSG00000235620	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10081365	1.00[AMR][1000 genomes]
rs10248631	1.00[AMR][1000 genomes]
rs12112419	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464444	chr7:49671882-50454736	Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv606897	chr7:49671883-50454736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv498090	chr7:49708644-50427714	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1020869	chr7:49712860-50457544	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1024102	chr7:50195864-50418159	Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1020285	chr7:50229750-50258911	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50241600-50259000	Enhancers	Fetal Thymus	thymus
2	chr7:50245400-50256400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr7:50245600-50256200	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr7:50246600-50257600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr7:50246600-50257800	Enhancers	Thymus	Thymus
6	chr7:50246600-50258000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr7:50246600-50258600	Enhancers	Primary T cells fromperipheralblood	blood
8	chr7:50246800-50258600	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr7:50247200-50260400	Enhancers	Primary hematopoietic stem cells	blood
10	chr7:50249200-50256000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr7:50249400-50259400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr7:50249600-50254400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr7:50250600-50257800	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr7:50251000-50254400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
15	chr7:50251400-50254800	Enhancers	Primary B cells from cord blood	blood
16	chr7:50251800-50254400	Enhancers	Dnd41	blood
17	chr7:50251800-50261600	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr7:50252600-50254400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
19	chr7:50253400-50254400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr7:50253400-50256600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr7:50253800-50256000	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr7:50253800-50257000	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr7:50253800-50258000	Enhancers	Primary T cells from cord blood	blood
24	chr7:50253800-50259000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr7:50254000-50255200	Weak transcription	Duodenum Mucosa	Duodenum
26	chr7:50254000-50255400	Weak transcription	Spleen	Spleen
27	chr7:50254200-50254800	Enhancers	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links