Variant report

Variant	rs73698352
Chromosome Location	chr8:106886402-106886403
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11992498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28600210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59757927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7837407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv891261	chr8:106880649-106932634	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106885600-106886800	Enhancers	NHEK	skin
2	chr8:106885600-106887000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr8:106886000-106886600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr8:106886200-106886600	Enhancers	HMEC	breast
5	chr8:106886200-106886800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:106886400-106886800	Enhancers	NHDF-Ad	bronchial
7	chr8:106886400-106887000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links