Variant report

Variant	rs73700323
Chromosome Location	chr7:66495228-66495229
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10447523	0.83[ASN][1000 genomes]
rs10950059	0.90[ASN][1000 genomes]
rs11526166	0.91[ASN][1000 genomes]
rs11773131	0.90[ASN][1000 genomes]
rs56405861	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs56805660	0.82[EUR][1000 genomes]
rs56907687	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58054935	0.88[ASN][1000 genomes]
rs61680214	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6968334	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6968733	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7457479	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758118	chr7:66401430-66859253	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2759535	chr7:66401430-66859253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv1032575	chr7:66432853-66576034	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv981515	chr7:66477535-66532313	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
5	nsv824151	chr7:66494072-66508524	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv33653	chr7:66494301-66508342	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66462400-66496000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr7:66462400-66500200	Weak transcription	Psoas Muscle	Psoas
3	chr7:66462400-66508000	Weak transcription	Stomach Mucosa	stomach
4	chr7:66462600-66497200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr7:66463000-66507800	Weak transcription	Fetal Brain Male	brain
6	chr7:66463200-66510000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr7:66476800-66496800	Weak transcription	NHLF	lung
8	chr7:66477000-66499000	Weak transcription	Colonic Mucosa	Colon
9	chr7:66483400-66502000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr7:66483400-66551200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr7:66483600-66534400	Weak transcription	Aorta	Aorta
12	chr7:66485800-66501000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr7:66486400-66531600	Weak transcription	Ovary	ovary
14	chr7:66486600-66507600	Weak transcription	Colon Smooth Muscle	Colon
15	chr7:66487000-66515800	Weak transcription	Fetal Brain Female	brain
16	chr7:66487000-66576600	Weak transcription	Gastric	stomach
17	chr7:66487800-66508600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr7:66488000-66497200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr7:66488000-66500200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr7:66488000-66501000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr7:66488000-66501000	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr7:66488000-66501400	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr7:66488000-66501400	Weak transcription	Hela-S3	cervix
24	chr7:66488000-66502000	Weak transcription	Brain Angular Gyrus	brain
25	chr7:66488000-66508600	Weak transcription	Fetal Lung	lung
26	chr7:66488000-66511800	Weak transcription	HepG2	liver
27	chr7:66488400-66501000	Weak transcription	Brain Anterior Caudate	brain
28	chr7:66488400-66501800	Weak transcription	Fetal Heart	heart
29	chr7:66488800-66500200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr7:66489200-66498000	Weak transcription	Placenta	Placenta
31	chr7:66490200-66495400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr7:66490800-66496000	Weak transcription	HUVEC	blood vessel
33	chr7:66490800-66505600	Weak transcription	Small Intestine	intestine
34	chr7:66491000-66501400	Weak transcription	HSMM	muscle
35	chr7:66491000-66507600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr7:66491200-66500800	Weak transcription	HSMMtube	muscle
37	chr7:66491200-66506000	Weak transcription	Osteobl	bone
38	chr7:66493600-66506000	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr7:66494200-66495600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr7:66494400-66495400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
41	chr7:66494400-66495400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr7:66494400-66495400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr7:66494400-66495400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr7:66494400-66495400	Strong transcription	Liver	Liver
45	chr7:66494400-66495400	Strong transcription	Fetal Intestine Large	intestine
46	chr7:66494400-66495400	ZNF genes & repeats	Dnd41	blood
47	chr7:66494400-66495600	ZNF genes & repeats	Fetal Intestine Small	intestine
48	chr7:66494400-66495600	Strong transcription	Fetal Stomach	stomach
49	chr7:66494600-66495400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
50	chr7:66494600-66495400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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