Variant report

Variant	rs73700404
Chromosome Location	chr7:66810105-66810106
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:66806712..66809740-chr7:66809964..66812550,3	K562	blood:
2	chr7:66808425..66811415-chr7:66821937..66824541,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10240516	0.81[AFR][1000 genomes]
rs28431997	0.82[AFR][1000 genomes]
rs9654868	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758118	chr7:66401430-66859253	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2759535	chr7:66401430-66859253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv888330	chr7:66502171-66877880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
4	nsv1027702	chr7:66722103-66841913	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	nsv1031048	chr7:66722103-66844039	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	nsv966839	chr7:66805198-66815088	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1031560	chr7:66805244-66846663	Enhancers Strong transcription Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1022779	chr7:66805244-66849392	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv970413	chr7:66808251-66815088	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66781400-66810200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr7:66785800-66816200	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr7:66801200-66812000	Weak transcription	Gastric	stomach
4	chr7:66802600-66811800	Weak transcription	Stomach Mucosa	stomach
5	chr7:66802800-66814800	Weak transcription	HSMMtube	muscle
6	chr7:66803200-66811600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr7:66804400-66810200	Strong transcription	Fetal Intestine Large	intestine
8	chr7:66804600-66810400	Strong transcription	Primary T cells from cord blood	blood
9	chr7:66804600-66811200	Strong transcription	Duodenum Mucosa	Duodenum
10	chr7:66805200-66816200	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr7:66806200-66813400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr7:66807200-66811000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr7:66807200-66819600	Weak transcription	Brain Anterior Caudate	brain
14	chr7:66807200-66822400	Weak transcription	Brain Hippocampus Middle	brain
15	chr7:66808000-66810200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
16	chr7:66808200-66810200	Strong transcription	Primary B cells from cord blood	blood
17	chr7:66808200-66810600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr7:66808400-66810200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr7:66808400-66816200	Weak transcription	Thymus	Thymus
20	chr7:66808400-66822200	Weak transcription	Right Ventricle	heart
21	chr7:66808600-66810200	Strong transcription	Brain Inferior Temporal Lobe	brain
22	chr7:66808800-66815600	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr7:66809000-66810400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr7:66809000-66810400	ZNF genes & repeats	NHEK	skin
25	chr7:66809000-66810600	ZNF genes & repeats	Fetal Stomach	stomach
26	chr7:66809000-66812400	Genic enhancers	Skeletal Muscle Female	skeletal muscle
27	chr7:66809200-66810200	ZNF genes & repeats	Liver	Liver
28	chr7:66809200-66810200	ZNF genes & repeats	Ovary	ovary
29	chr7:66809200-66812400	Weak transcription	Fetal Muscle Trunk	muscle
30	chr7:66809200-66813000	Weak transcription	Brain Germinal Matrix	brain
31	chr7:66809400-66810200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
32	chr7:66809400-66810200	ZNF genes & repeats	Adipose Nuclei	Adipose
33	chr7:66809400-66810400	ZNF genes & repeats	Placenta	Placenta
34	chr7:66809400-66811000	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr7:66809400-66811200	Strong transcription	Duodenum Smooth Muscle	Duodenum
36	chr7:66809600-66810200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
37	chr7:66809600-66810200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr7:66809600-66810200	Strong transcription	Brain Angular Gyrus	brain
39	chr7:66809600-66810400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
40	chr7:66809600-66810400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr7:66809600-66811200	Strong transcription	Left Ventricle	heart
42	chr7:66809600-66811600	Strong transcription	Brain Substantia Nigra	brain
43	chr7:66809800-66810200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr7:66809800-66811400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr7:66809800-66812400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr7:66809800-66815000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
47	chr7:66809800-66816000	Weak transcription	Dnd41	blood
48	chr7:66809800-66822600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr7:66809800-66822800	Weak transcription	Brain Cingulate Gyrus	brain
50	chr7:66810000-66810200	Weak transcription	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links