Variant report

Variant	rs73700859
Chromosome Location	chr8:110349486-110349487
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:110346229..110349558-chr8:110551131..110555531,7	K562	blood:
2	chr8:110296774..110299286-chr8:110348162..110350315,2	K562	blood:
3	chr8:110344786..110348564-chr8:110349076..110353866,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000120526	Chromatin interaction
ENSG00000120533	Chromatin interaction
ENSG00000147654	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73700865	1.00[AFR][1000 genomes]
rs73700868	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891273	chr8:110219735-110475874	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv891279	chr8:110268104-110450092	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv891280	chr8:110346363-110465481	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110347000-110358200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:110347000-110358400	Weak transcription	Spleen	Spleen
3	chr8:110347000-110358800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:110347200-110354800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:110347200-110355000	Weak transcription	Lung	lung
6	chr8:110347200-110357600	Weak transcription	Pancreas	Pancrea
7	chr8:110347200-110358200	Weak transcription	Esophagus	oesophagus
8	chr8:110347200-110359800	Weak transcription	Gastric	stomach
9	chr8:110347400-110349800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr8:110347400-110350000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr8:110347400-110351200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr8:110347400-110356200	Weak transcription	Ovary	ovary
13	chr8:110347400-110358000	Weak transcription	Colonic Mucosa	Colon
14	chr8:110347400-110358400	Weak transcription	Fetal Brain Male	brain
15	chr8:110347400-110359400	Weak transcription	Aorta	Aorta
16	chr8:110347400-110359400	Weak transcription	Brain Substantia Nigra	brain
17	chr8:110347400-110360000	Weak transcription	Stomach Mucosa	stomach
18	chr8:110347600-110349800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr8:110347600-110350000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr8:110347600-110350200	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr8:110347600-110350400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr8:110347600-110354800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr8:110347600-110354800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr8:110347600-110356000	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr8:110347600-110357800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr8:110347600-110358200	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr8:110347600-110358200	Weak transcription	HSMMtube	muscle
28	chr8:110347600-110358400	Weak transcription	Fetal Stomach	stomach
29	chr8:110348000-110349600	Weak transcription	Thymus	Thymus
30	chr8:110348000-110350800	Weak transcription	Psoas Muscle	Psoas
31	chr8:110348000-110351000	Weak transcription	Brain Angular Gyrus	brain
32	chr8:110348000-110356200	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr8:110348000-110358400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr8:110348200-110349600	Enhancers	Fetal Heart	heart
35	chr8:110348200-110350600	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr8:110348200-110353400	Strong transcription	Primary B cells from peripheral blood	blood
37	chr8:110348200-110355200	Strong transcription	Fetal Muscle Trunk	muscle
38	chr8:110348200-110356600	Strong transcription	HUES48 Cell Line	embryonic stem cell
39	chr8:110348200-110356600	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr8:110348200-110356600	Strong transcription	A549	lung
41	chr8:110348200-110356800	Strong transcription	Placenta	Placenta
42	chr8:110348200-110356800	Strong transcription	NH-A	brain
43	chr8:110348200-110357000	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr8:110348200-110357000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
45	chr8:110348200-110357400	Strong transcription	Primary B cells from cord blood	blood
46	chr8:110348200-110357400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr8:110348200-110357400	Strong transcription	Fetal Intestine Large	intestine
48	chr8:110348400-110349600	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr8:110348400-110349600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr8:110348400-110350400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links