Variant report

Variant	rs73701912
Chromosome Location	chr8:102520958-102520959
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102344223..102345816-chr8:102520424..102522651,2	MCF-7	breast:
2	chr8:102326841..102405579-chr8:102488885..102536287,493	MCF-7	breast:

Variant related genes	Relation type
ENSG00000228224	Chromatin interaction
ENSG00000271560	Chromatin interaction
ENSG00000254063	Chromatin interaction
ENSG00000253644	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10087713	1.00[EUR][1000 genomes]
rs10089813	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10100857	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59219670	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73701909	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73701913	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024652	chr8:101802121-102587124	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases
2	nsv539699	chr8:101802121-102587124	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102507400-102526600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:102514800-102526600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr8:102517200-102525800	Weak transcription	Pancreas	Pancrea
4	chr8:102517200-102526200	Weak transcription	Gastric	stomach
5	chr8:102517200-102526200	Weak transcription	Stomach Mucosa	stomach
6	chr8:102517200-102526400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr8:102517200-102526600	Weak transcription	Fetal Intestine Small	intestine
8	chr8:102517400-102526000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr8:102517400-102526200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr8:102517400-102526400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr8:102517400-102526600	Weak transcription	Fetal Intestine Large	intestine
12	chr8:102518200-102526000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr8:102518800-102526000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr8:102519200-102526200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr8:102519200-102526600	Weak transcription	A549	lung
16	chr8:102520000-102521000	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr8:102520200-102521000	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr8:102520200-102521200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr8:102520400-102521000	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr8:102520400-102521000	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr8:102520400-102521000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr8:102520400-102521000	Enhancers	Brain Hippocampus Middle	brain
23	chr8:102520400-102521200	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr8:102520600-102521000	Enhancers	HMEC	breast
25	chr8:102520600-102521000	Enhancers	NHEK	skin
26	chr8:102520600-102521200	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr8:102520800-102521200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr8:102520800-102522000	Enhancers	Fetal Lung	lung

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