Variant report
| Variant | rs73703403 |
|---|---|
| Chromosome Location | chr8:117831391-117831392 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:117827651..117829253-chr8:117830596..117833306,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs16889013 | 1.00[AMR][1000 genomes] |
| rs55753611 | 1.00[ASN][1000 genomes] |
| rs57703266 | 1.00[ASN][1000 genomes] |
| rs58843308 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59526803 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60697895 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60843964 | 1.00[ASN][1000 genomes] |
| rs7012684 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73701495 | 1.00[ASN][1000 genomes] |
| rs73701497 | 0.82[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73701498 | 0.82[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73701500 | 0.82[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73701501 | 1.00[ASN][1000 genomes] |
| rs73701502 | 1.00[ASN][1000 genomes] |
| rs73703405 | 1.00[ASN][1000 genomes] |
| rs73703406 | 1.00[ASN][1000 genomes] |
| rs73703408 | 0.85[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73703409 | 0.82[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7840707 | 1.00[ASN][1000 genomes] |
| rs7840992 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530386 | chr8:117509968-118391406 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
| 2 | nsv831434 | chr8:117784467-117977825 | Flanking Active TSS Genic enhancers Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
| 3 | nsv1027259 | chr8:117790928-117842055 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS | Chromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv1034015 | chr8:117790928-117843979 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS | Chromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:117830400-117835000 | Weak transcription | Aorta | Aorta |
| 2 | chr8:117831200-117831400 | Enhancers | HSMMtube | muscle |
