Variant report

Variant	rs73704554
Chromosome Location	chr8:126219868-126219869
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:126218358..126220845-chr8:126354499..126357060,2	K562	blood:
2	chr8:126213738..126215975-chr8:126217898..126220188,2	K562	blood:
3	chr8:126215979..126218498-chr8:126219244..126222199,2	K562	blood:
4	chr8:126214703..126218445-chr8:126219117..126223784,5	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16900461	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56380777	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56397455	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73704544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73704546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73704550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv949614	chr8:126063646-126376699	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv917158	chr8:126101990-126255266	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
4	nsv1034798	chr8:126179383-126241525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	esv3421913	chr8:126207819-126222864	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126142600-126231400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr8:126194200-126226000	Weak transcription	Ovary	ovary
3	chr8:126201200-126228200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr8:126201600-126224000	Weak transcription	Liver	Liver
5	chr8:126201600-126231200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr8:126201600-126231600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr8:126201600-126236600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr8:126201800-126226000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr8:126201800-126230200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr8:126202200-126232200	Weak transcription	Primary B cells from cord blood	blood
11	chr8:126202600-126237400	Weak transcription	Fetal Thymus	thymus
12	chr8:126202800-126231600	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr8:126203200-126231400	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr8:126203800-126231000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr8:126204200-126226400	Weak transcription	Pancreas	Pancrea
16	chr8:126204200-126231000	Weak transcription	Brain Angular Gyrus	brain
17	chr8:126204200-126231200	Weak transcription	Brain Hippocampus Middle	brain
18	chr8:126204400-126224800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr8:126204400-126225400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr8:126204400-126238600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr8:126204400-126239600	Weak transcription	Primary T cells from cord blood	blood
22	chr8:126204600-126222000	Weak transcription	HepG2	liver
23	chr8:126205200-126222400	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr8:126205200-126224800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr8:126205200-126231200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr8:126205400-126230000	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr8:126205600-126220000	Weak transcription	A549	lung
28	chr8:126206400-126222200	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr8:126214400-126225400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr8:126214400-126226000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr8:126214400-126226200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr8:126214400-126237400	Weak transcription	Thymus	Thymus
33	chr8:126214400-126238600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr8:126214600-126222000	Weak transcription	Fetal Stomach	stomach
35	chr8:126214600-126228600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr8:126214600-126230800	Weak transcription	Fetal Muscle Trunk	muscle
37	chr8:126214600-126231200	Weak transcription	Fetal Lung	lung
38	chr8:126214600-126231400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr8:126216600-126220200	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr8:126216600-126220200	Weak transcription	Esophagus	oesophagus
41	chr8:126216800-126224200	Weak transcription	Stomach Mucosa	stomach
42	chr8:126217000-126220200	Weak transcription	HSMM	muscle
43	chr8:126217200-126226400	Weak transcription	Aorta	Aorta
44	chr8:126217200-126226400	Weak transcription	Gastric	stomach
45	chr8:126217400-126226000	Weak transcription	Hela-S3	cervix
46	chr8:126217400-126238600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr8:126217800-126230400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr8:126218000-126226000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr8:126218000-126226000	Weak transcription	Fetal Kidney	kidney
50	chr8:126218000-126231600	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links