Variant report
| Variant | rs73705294 |
|---|---|
| Chromosome Location | chr7:87279752-87279753 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:87269655..87271490-chr7:87279266..87280881,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs11983624 | 1.00[AMR][1000 genomes] |
| rs28364279 | 1.00[AMR][1000 genomes] |
| rs45622746 | 1.00[AMR][1000 genomes] |
| rs58496736 | 1.00[AMR][1000 genomes] |
| rs73705208 | 1.00[AMR][1000 genomes] |
| rs73705209 | 1.00[AMR][1000 genomes] |
| rs73705230 | 1.00[AMR][1000 genomes] |
| rs73705249 | 1.00[AMR][1000 genomes] |
| rs73705261 | 1.00[AMR][1000 genomes] |
| rs73705262 | 1.00[AMR][1000 genomes] |
| rs73705265 | 1.00[AMR][1000 genomes] |
| rs73705280 | 1.00[AMR][1000 genomes] |
| rs73705292 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73706927 | 1.00[AMR][1000 genomes] |
| rs73706929 | 1.00[AMR][1000 genomes] |
| rs7784510 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs8187785 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv888677 | chr7:86802025-87781111 | Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 53 gene(s) | inside rSNPs | diseases |
| 2 | nsv464622 | chr7:86832603-87541248 | Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 49 gene(s) | inside rSNPs | diseases |
| 3 | nsv607725 | chr7:86832603-87541248 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 49 gene(s) | inside rSNPs | diseases |
| 4 | nsv1015862 | chr7:87075394-88049798 | Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 36 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:87279600-87280400 | Enhancers | Muscle Satellite Cultured Cells | -- |
