Variant report

Variant	rs73707199
Chromosome Location	chr8:121869921-121869922
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:121854976..121857000-chr8:121869044..121870751,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16894417	1.00[EUR][1000 genomes]
rs16894450	1.00[EUR][1000 genomes]
rs16894452	1.00[EUR][1000 genomes]
rs16894453	1.00[EUR][1000 genomes]
rs58065721	1.00[EUR][1000 genomes]
rs58181448	1.00[EUR][1000 genomes]
rs73321294	1.00[EUR][1000 genomes]
rs73323113	1.00[EUR][1000 genomes]
rs73323123	1.00[EUR][1000 genomes]
rs73323146	1.00[EUR][1000 genomes]
rs73707190	1.00[EUR][1000 genomes]
rs73707201	1.00[EUR][1000 genomes]
rs73707202	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016172	chr8:121679590-121929916	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv891423	chr8:121847643-121994660	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv465790	chr8:121853405-122185415	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv612114	chr8:121853405-122185415	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv437632	chr8:121861465-121877076	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv612115	chr8:121868551-121873486	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv612116	chr8:121868551-121874346	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3402396	chr8:121869621-121871769	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121864600-121870000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:121868200-121872600	Enhancers	NHLF	lung
3	chr8:121868400-121871400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr8:121868800-121871000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr8:121868800-121874600	Enhancers	Primary hematopoietic stem cells	blood
6	chr8:121868800-121877200	Enhancers	HepG2	liver
7	chr8:121869000-121870200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr8:121869000-121870400	Enhancers	Dnd41	blood
9	chr8:121869000-121870600	Enhancers	HSMMtube	muscle
10	chr8:121869000-121871600	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr8:121869000-121874600	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr8:121869000-121874800	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr8:121869200-121870200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
14	chr8:121869200-121870400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr8:121869200-121870400	Enhancers	Primary B cells from cord blood	blood
16	chr8:121869200-121870400	Enhancers	Primary B cells from peripheral blood	blood
17	chr8:121869200-121870400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr8:121869200-121870400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr8:121869200-121870400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr8:121869200-121870400	Enhancers	Fetal Thymus	thymus
21	chr8:121869200-121870400	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr8:121869200-121870400	Enhancers	HMEC	breast
23	chr8:121869200-121870400	Enhancers	HUVEC	blood vessel
24	chr8:121869200-121870400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
25	chr8:121869200-121870400	Enhancers	NH-A	brain
26	chr8:121869200-121871000	Enhancers	Primary T cells fromperipheralblood	blood
27	chr8:121869200-121871000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr8:121869200-121871000	Enhancers	Fetal Muscle Leg	muscle
29	chr8:121869200-121871000	Enhancers	HSMM	muscle
30	chr8:121869400-121870000	Enhancers	Colonic Mucosa	Colon
31	chr8:121869400-121870200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
32	chr8:121869400-121870200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr8:121869400-121870200	Enhancers	Duodenum Mucosa	Duodenum
34	chr8:121869400-121870200	Enhancers	Fetal Intestine Large	intestine
35	chr8:121869400-121870400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr8:121869400-121870400	Enhancers	Liver	Liver
37	chr8:121869400-121870400	Enhancers	Fetal Lung	lung
38	chr8:121869400-121870400	Enhancers	Rectal Mucosa Donor 29	rectum
39	chr8:121869400-121870400	Enhancers	Small Intestine	intestine
40	chr8:121869400-121870400	Enhancers	Thymus	Thymus
41	chr8:121869400-121871000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
42	chr8:121869400-121871000	Enhancers	Fetal Kidney	kidney
43	chr8:121869400-121871200	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr8:121869400-121872200	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr8:121869600-121870000	Enhancers	NHDF-Ad	bronchial
46	chr8:121869600-121870200	Enhancers	ES-I3 Cell Line	embryonic stem cell
47	chr8:121869600-121870200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr8:121869600-121870200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
49	chr8:121869600-121870200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr8:121869600-121870200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood

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