Variant report

Variant	rs73707200
Chromosome Location	chr8:121871953-121871954
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:121865313..121867738-chr8:121870281..121872439,2	MCF-7	breast:
2	chr8:121865791..121868375-chr8:121870953..121873135,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10087377	0.86[ASN][1000 genomes]
rs10092683	1.00[ASN][1000 genomes]
rs11989156	0.86[ASN][1000 genomes]
rs11996249	0.86[ASN][1000 genomes]
rs28769891	0.86[ASN][1000 genomes]
rs60773793	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs73707196	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73707197	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs7840108	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016172	chr8:121679590-121929916	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv891423	chr8:121847643-121994660	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv465790	chr8:121853405-122185415	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv612114	chr8:121853405-122185415	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv437632	chr8:121861465-121877076	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv612115	chr8:121868551-121873486	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv612116	chr8:121868551-121874346	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121868200-121872600	Enhancers	NHLF	lung
2	chr8:121868800-121874600	Enhancers	Primary hematopoietic stem cells	blood
3	chr8:121868800-121877200	Enhancers	HepG2	liver
4	chr8:121869000-121874600	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr8:121869000-121874800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr8:121869400-121872200	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr8:121870000-121873400	Weak transcription	Colonic Mucosa	Colon
8	chr8:121870000-121873400	Weak transcription	Right Ventricle	heart
9	chr8:121870200-121872000	Enhancers	Primary T cells from cord blood	blood
10	chr8:121870200-121872000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr8:121870200-121873400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr8:121870200-121873400	Weak transcription	Pancreas	Pancrea
13	chr8:121870200-121873600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr8:121870200-121873800	Weak transcription	Gastric	stomach
15	chr8:121870200-121874800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr8:121870200-121875000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr8:121870400-121872400	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr8:121870400-121872400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr8:121870400-121872600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr8:121870400-121873200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr8:121870400-121873200	Weak transcription	Fetal Thymus	thymus
22	chr8:121870400-121873200	Weak transcription	Lung	lung
23	chr8:121870400-121873200	Weak transcription	Spleen	Spleen
24	chr8:121870400-121873200	Weak transcription	HMEC	breast
25	chr8:121870400-121873200	Weak transcription	HUVEC	blood vessel
26	chr8:121870400-121873400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr8:121870400-121873400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr8:121870400-121873400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr8:121870400-121873400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr8:121870400-121873400	Weak transcription	Adipose Nuclei	Adipose
31	chr8:121870400-121873400	Weak transcription	Liver	Liver
32	chr8:121870400-121873400	Weak transcription	Left Ventricle	heart
33	chr8:121870400-121873400	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr8:121870400-121873400	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr8:121870400-121873400	Weak transcription	Thymus	Thymus
36	chr8:121870400-121873400	Weak transcription	Dnd41	blood
37	chr8:121870400-121873400	Enhancers	Monocytes-CD14+_RO01746	blood
38	chr8:121870400-121873600	Weak transcription	Primary B cells from cord blood	blood
39	chr8:121870400-121873600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr8:121870400-121873600	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr8:121870400-121873800	Weak transcription	Psoas Muscle	Psoas
42	chr8:121870400-121875000	Enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr8:121871000-121873200	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr8:121871000-121873200	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr8:121871000-121873200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr8:121871000-121873200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr8:121871000-121873200	Weak transcription	Osteobl	bone
48	chr8:121871000-121873400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr8:121871000-121873400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr8:121871000-121873400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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