Variant report

Variant	rs73709546
Chromosome Location	chr7:98691641-98691642
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:98690668..98694629-chr7:98738335..98742614,7	MCF-7	breast:
2	chr7:98689928..98692468-chr7:98692672..98695703,4	K562	blood:
3	chr7:98689157..98692121-chr7:98696694..98698453,3	K562	blood:
4	chr7:98691119..98693568-chr7:98716635..98719338,2	K562	blood:

Variant related genes	Relation type
ENSG00000198742	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10241277	1.00[EUR][1000 genomes]
rs10441294	1.00[EUR][1000 genomes]
rs34983214	1.00[EUR][1000 genomes]
rs59206769	1.00[EUR][1000 genomes]
rs61532425	1.00[EUR][1000 genomes]
rs73709547	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73709548	1.00[EUR][1000 genomes]
rs73709549	1.00[EUR][1000 genomes]
rs73711446	1.00[EUR][1000 genomes]
rs73711456	1.00[EUR][1000 genomes]
rs73711457	1.00[EUR][1000 genomes]
rs73711459	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98676600-98702200	Weak transcription	Brain Germinal Matrix	brain
2	chr7:98677000-98693400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr7:98677000-98693400	Weak transcription	Aorta	Aorta
4	chr7:98677000-98693600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr7:98677000-98694800	Weak transcription	Fetal Intestine Small	intestine
6	chr7:98677000-98696200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr7:98677000-98696200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr7:98677000-98700000	Weak transcription	HSMM	muscle
9	chr7:98677200-98692000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr7:98677200-98693400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr7:98677200-98705400	Weak transcription	Fetal Thymus	thymus
12	chr7:98677600-98693400	Weak transcription	Rectal Smooth Muscle	rectum
13	chr7:98677600-98693600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr7:98678800-98693400	Weak transcription	Left Ventricle	heart
15	chr7:98678800-98700000	Weak transcription	HUVEC	blood vessel
16	chr7:98679000-98693400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr7:98681600-98693200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr7:98681600-98693800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr7:98681800-98691800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr7:98681800-98693200	Weak transcription	Osteobl	bone
21	chr7:98681800-98693400	Weak transcription	HMEC	breast
22	chr7:98681800-98693800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr7:98681800-98700600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr7:98682600-98693200	Weak transcription	Small Intestine	intestine
25	chr7:98684200-98693400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr7:98684400-98692000	Weak transcription	Fetal Brain Male	brain
27	chr7:98684400-98693000	Weak transcription	Fetal Lung	lung
28	chr7:98684400-98706600	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr7:98684600-98693400	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr7:98684600-98693400	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr7:98684600-98693400	Weak transcription	Fetal Brain Female	brain
32	chr7:98684600-98693600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr7:98684600-98694600	Weak transcription	Primary B cells from cord blood	blood
34	chr7:98684600-98694800	Weak transcription	Primary T cells from cord blood	blood
35	chr7:98684600-98694800	Weak transcription	Primary hematopoietic stem cells	blood
36	chr7:98686200-98693200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr7:98687800-98692200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr7:98688200-98693400	Weak transcription	Esophagus	oesophagus
39	chr7:98688200-98693400	Weak transcription	Fetal Muscle Leg	muscle
40	chr7:98688200-98693600	Weak transcription	Spleen	Spleen
41	chr7:98688200-98696800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr7:98688600-98693600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr7:98689000-98695000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr7:98689200-98693400	Weak transcription	Stomach Smooth Muscle	stomach
45	chr7:98689200-98693600	Weak transcription	NHEK	skin
46	chr7:98689200-98695800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr7:98689200-98696200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr7:98689200-98696200	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr7:98689400-98692200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr7:98689400-98692200	Weak transcription	NHLF	lung

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