Variant report

Variant	rs73709787
Chromosome Location	chr7:83877094-83877095
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs57499577	1.00[AMR][1000 genomes]
rs57644539	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61344659	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709582	0.87[AFR][1000 genomes]
rs73709594	0.87[AFR][1000 genomes]
rs73709596	0.87[AFR][1000 genomes]
rs73711508	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711510	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73712706	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv888629	chr7:83722691-83896025	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1017884	chr7:83724138-83972995	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv538995	chr7:83724138-83972995	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2754468	chr7:83851249-84166749	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv5818	chr7:83874968-83919804	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83875200-83879600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr7:83875400-83878000	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr7:83875400-83880600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:83875800-83893800	Weak transcription	NHDF-Ad	bronchial
5	chr7:83876800-83877800	Enhancers	NHEK	skin
6	chr7:83876800-83878400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:83876800-83881000	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr7:83877000-83877400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:83877000-83878400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:83877000-83878400	Enhancers	Rectal Smooth Muscle	rectum
11	chr7:83877000-83879600	Weak transcription	NH-A	brain
12	chr7:83877000-83880000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links