Variant report

Variant	rs73710449
Chromosome Location	chr7:98977643-98977644
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:98976910..98979073-chr7:98989172..98991412,2	MCF-7	breast:
2	chr7:98975447..98980936-chr7:99003746..99008536,8	MCF-7	breast:
3	chr7:98927030..98929384-chr7:98976181..98977844,2	MCF-7	breast:
4	chr7:98975439..98979350-chr7:99003635..99008025,5	K562	blood:
5	chr7:98976344..98978332-chr7:98985918..98989033,3	MCF-7	breast:
6	chr7:98965082..98967314-chr7:98975254..98977961,2	K562	blood:
7	chr7:98976192..98977767-chr7:99011584..99014530,2	MCF-7	breast:
8	chr7:98975550..98978554-chr7:98995134..98998882,4	K562	blood:
9	chr7:98977091..98978617-chr7:99034122..99036702,2	MCF-7	breast:
10	chr17:66637981..66640873-chr7:98975754..98977781,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000106245	Chromatin interaction
ENSG00000239133	Chromatin interaction
ENSG00000160917	Chromatin interaction
ENSG00000130429	Chromatin interaction
ENSG00000106246	Chromatin interaction
ENSG00000106244	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs73709642	0.83[AFR][1000 genomes]
rs73709644	0.83[AFR][1000 genomes]
rs73709646	0.83[AFR][1000 genomes]
rs73710440	0.83[AFR][1000 genomes]
rs73710446	0.83[AFR][1000 genomes]
rs73710448	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv831069	chr7:98948128-99127584	Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98971000-98990400	Weak transcription	Fetal Kidney	kidney
2	chr7:98973200-98978800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:98973400-98978400	Weak transcription	Psoas Muscle	Psoas
4	chr7:98973400-98978600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:98973400-98978800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr7:98973400-98979000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr7:98973400-98979200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr7:98973400-98984000	Weak transcription	Aorta	Aorta
9	chr7:98973400-98984200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:98973400-98984200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:98973400-98984200	Weak transcription	Ovary	ovary
12	chr7:98973400-98984400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr7:98973400-98987400	Weak transcription	Brain Germinal Matrix	brain
14	chr7:98973400-98987800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr7:98973400-98989800	Weak transcription	Brain Angular Gyrus	brain
16	chr7:98974200-98978200	Weak transcription	Pancreas	Pancrea
17	chr7:98974800-98979800	Strong transcription	Fetal Intestine Small	intestine
18	chr7:98975000-98978400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr7:98976600-98978200	Flanking Active TSS	Hela-S3	cervix
20	chr7:98976600-98978200	Enhancers	HepG2	liver
21	chr7:98976600-98978400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr7:98976600-98978600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
23	chr7:98976600-98978600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
24	chr7:98976600-98978600	Enhancers	NH-A	brain
25	chr7:98976600-98978800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr7:98976600-98978800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
27	chr7:98976600-98978800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
28	chr7:98976600-98979000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
29	chr7:98976600-98979200	Flanking Active TSS	Primary B cells from cord blood	blood
30	chr7:98976600-98979200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr7:98976600-98979200	Flanking Active TSS	GM12878-XiMat	blood
32	chr7:98976600-98979400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr7:98976800-98977800	Enhancers	H1 Cell Line	embryonic stem cell
34	chr7:98976800-98977800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr7:98976800-98977800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr7:98976800-98977800	Enhancers	Fetal Stomach	stomach
37	chr7:98976800-98977800	Flanking Active TSS	Rectal Smooth Muscle	rectum
38	chr7:98976800-98977800	Transcr. at gene 5' and 3'	A549	lung
39	chr7:98976800-98977800	Enhancers	HSMM	muscle
40	chr7:98976800-98977800	Flanking Active TSS	NHEK	skin
41	chr7:98976800-98978000	Enhancers	HSMMtube	muscle
42	chr7:98976800-98978000	Flanking Active TSS	K562	blood
43	chr7:98976800-98978200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr7:98976800-98978200	Genic enhancers	HUES6 Cell Line	embryonic stem cell
45	chr7:98976800-98978200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr7:98976800-98978200	Enhancers	Liver	Liver
47	chr7:98976800-98978200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
48	chr7:98976800-98978400	Enhancers	ES-I3 Cell Line	embryonic stem cell
49	chr7:98976800-98978400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr7:98976800-98978600	Flanking Active TSS	Primary T cells from cord blood	blood

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