Variant report

Variant	rs73711925
Chromosome Location	chr8:119804405-119804406
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16891444	1.00[AMR][1000 genomes]
rs55967834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59654179	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61317133	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73711924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73711932	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73711933	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7823510	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891414	chr8:119755490-119881550	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119795600-119809200	Weak transcription	Aorta	Aorta
2	chr8:119800800-119804600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr8:119801000-119804600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:119801000-119805000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr8:119801000-119809200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:119801200-119805000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:119801400-119804600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:119801400-119804600	Weak transcription	Osteobl	bone
9	chr8:119801400-119805000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr8:119801400-119805000	Weak transcription	NHDF-Ad	bronchial
11	chr8:119803400-119804600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr8:119803600-119804600	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr8:119803600-119804600	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr8:119804000-119804600	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr8:119804000-119804800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr8:119804200-119804600	Enhancers	H9 Cell Line	embryonic stem cell
17	chr8:119804200-119805200	Weak transcription	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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