Variant report

Variant	rs73712817
Chromosome Location	chr7:84333834-84333835
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10155838	0.81[AMR][1000 genomes]
rs10226259	0.81[AMR][1000 genomes]
rs10226299	0.81[AMR][1000 genomes]
rs10231229	0.81[AMR][1000 genomes]
rs10234675	0.81[AMR][1000 genomes]
rs10235779	0.81[AMR][1000 genomes]
rs10236624	0.81[AMR][1000 genomes]
rs10240135	0.81[AMR][1000 genomes]
rs10244742	0.81[AMR][1000 genomes]
rs10249541	0.81[AMR][1000 genomes]
rs10253977	0.81[AMR][1000 genomes]
rs10258050	0.81[AMR][1000 genomes]
rs10260013	0.81[AMR][1000 genomes]
rs10263930	0.81[AMR][1000 genomes]
rs10264994	0.81[AMR][1000 genomes]
rs10266193	0.81[AMR][1000 genomes]
rs10268436	0.81[AMR][1000 genomes]
rs10268834	0.81[AMR][1000 genomes]
rs10269265	0.81[AMR][1000 genomes]
rs10270396	0.91[AMR][1000 genomes]
rs10270546	0.81[AMR][1000 genomes]
rs10271786	0.81[AMR][1000 genomes]
rs10274807	0.81[AMR][1000 genomes]
rs13438201	0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1583140	0.81[AMR][1000 genomes]
rs1583141	0.81[AMR][1000 genomes]
rs1594376	0.81[AMR][1000 genomes]
rs1594377	0.81[AMR][1000 genomes]
rs28408003	0.81[AMR][1000 genomes]
rs28439673	0.81[AMR][1000 genomes]
rs28448564	0.81[AMR][1000 genomes]
rs28735889	0.81[AMR][1000 genomes]
rs28804974	0.81[AMR][1000 genomes]
rs28852818	0.81[AMR][1000 genomes]
rs4128624	0.84[AMR][1000 genomes]
rs4358754	0.81[AMR][1000 genomes]
rs4443588	0.81[AMR][1000 genomes]
rs4620233	0.81[AMR][1000 genomes]
rs4728561	0.81[AMR][1000 genomes]
rs4728562	0.81[AMR][1000 genomes]
rs4732586	0.81[AMR][1000 genomes]
rs57297444	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57745821	0.81[AMR][1000 genomes]
rs58474078	0.95[AMR][1000 genomes]
rs6947596	0.81[AMR][1000 genomes]
rs6957762	0.81[AMR][1000 genomes]
rs6975316	0.81[AMR][1000 genomes]
rs7781015	0.81[AMR][1000 genomes]
rs7793020	0.81[AMR][1000 genomes]
rs7796908	0.81[AMR][1000 genomes]
rs7797337	0.81[AMR][1000 genomes]
rs7797505	0.81[AMR][1000 genomes]
rs7809245	0.81[AMR][1000 genomes]
rs7810914	0.81[AMR][1000 genomes]
rs891484	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv888635	chr7:84086502-84344258	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv888636	chr7:84117594-84334498	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1031149	chr7:84144990-84404356	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv888638	chr7:84158180-84334498	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv888639	chr7:84158180-84344258	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv888640	chr7:84168615-84334498	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv888641	chr7:84168615-84453100	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv1031328	chr7:84182356-84377593	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv1016221	chr7:84183142-84377593	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv521668	chr7:84186159-84346026	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv888643	chr7:84196258-84453100	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv1019814	chr7:84208284-84369045	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	esv2762684	chr7:84218035-84444871	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
16	nsv831047	chr7:84231938-84408081	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
17	nsv888644	chr7:84253690-84386060	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	nsv831049	chr7:84277599-84475710	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
19	esv34238	chr7:84279023-84591966	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
20	nsv523844	chr7:84328077-84334498	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84333800-84334000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:84333800-84334000	Enhancers	Esophagus	oesophagus

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