Variant report

Variant	rs73712897
Chromosome Location	chr8:131304301-131304302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:131303917..131305771-chr8:131379241..131381202,2	MCF-7	breast:
2	chr8:131302789..131304679-chr8:131308821..131310748,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10087951	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10112253	1.00[AMR][1000 genomes]
rs13439267	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13439609	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28572338	1.00[AMR][1000 genomes]
rs56242784	1.00[AMR][1000 genomes]
rs73711700	1.00[AMR][1000 genomes]
rs73712892	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv465810	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv612234	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv870148	chr8:131206342-131373989	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131282400-131314800	Weak transcription	Gastric	stomach
2	chr8:131290200-131305400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:131290200-131305600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:131291800-131305400	Weak transcription	Lung	lung
5	chr8:131292800-131304800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr8:131297200-131304600	Weak transcription	Spleen	Spleen
7	chr8:131297200-131308200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:131297400-131304400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr8:131297400-131304400	Weak transcription	Brain Germinal Matrix	brain
10	chr8:131297400-131304600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr8:131297400-131305200	Weak transcription	Primary B cells from peripheral blood	blood
12	chr8:131297400-131305400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr8:131297400-131305600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr8:131297400-131305800	Weak transcription	Small Intestine	intestine
15	chr8:131297400-131306600	Weak transcription	Fetal Kidney	kidney
16	chr8:131297600-131304800	Weak transcription	Primary B cells from cord blood	blood
17	chr8:131297600-131311400	Weak transcription	Fetal Lung	lung
18	chr8:131298200-131305800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr8:131298600-131305400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr8:131299000-131304400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr8:131299200-131305200	Weak transcription	Thymus	Thymus
22	chr8:131299400-131305200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr8:131299400-131305200	Weak transcription	Fetal Thymus	thymus
24	chr8:131299400-131305400	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr8:131299800-131305400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr8:131299800-131305400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr8:131299800-131305400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr8:131300000-131304400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr8:131300000-131304400	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr8:131300000-131305000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr8:131300200-131304400	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr8:131300200-131304800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr8:131300400-131304600	Weak transcription	Brain Cingulate Gyrus	brain
34	chr8:131300400-131304800	Weak transcription	HMEC	breast
35	chr8:131300400-131305200	Weak transcription	HepG2	liver
36	chr8:131300400-131305400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr8:131300400-131305400	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr8:131300400-131305600	Weak transcription	NHEK	skin
39	chr8:131300400-131314800	Weak transcription	Fetal Muscle Trunk	muscle
40	chr8:131300600-131304400	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr8:131300600-131304600	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr8:131300800-131304400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr8:131300800-131304400	Weak transcription	Brain Hippocampus Middle	brain
44	chr8:131301000-131304600	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr8:131301000-131304600	Weak transcription	HSMM	muscle
46	chr8:131301000-131305200	Weak transcription	Fetal Intestine Small	intestine
47	chr8:131301000-131305400	Weak transcription	Pancreas	Pancrea
48	chr8:131301000-131308200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr8:131301000-131309600	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr8:131301200-131304400	Weak transcription	HUVEC	blood vessel

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