Variant report

Variant	rs73714363
Chromosome Location	chr7:116628617-116628618
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:116628498..116630174-chr7:116762682..116764395,2	MCF-7	breast:
2	chr7:116628176..116629096-chr7:116759155..116759821,3	MCF-7	breast:
3	7:116625476-116630972..7:116754962-116765597	GM12878	blood:
4	chr7:116589813..116597334-chr7:116621638..116628770,10	K562	blood:
5	chr7:116592630..116594901-chr7:116625856..116628693,3	MCF-7	breast:
6	chr7:116570554..116571105-chr7:116628097..116628835,2	K562	blood:
7	chr7:116628019..116628620-chr7:116759163..116759666,2	K562	blood:
8	7:115847372-115857098..7:116625476-116630972	H1-hESC	embryonic stem cell:	embryo
9	chr7:116628482..116629108-chr7:116652523..116653032,2	MCF-7	breast:
10	chr7:116626224..116628815-chr7:116757682..116760230,2	MCF-7	breast:
11	chr7:116628542..116629513-chr7:116652715..116653338,2	MCF-7	breast:
12	chr7:116623825..116626590-chr7:116627762..116629285,2	K562	blood:
13	chr7:116628175..116629134-chr7:116758992..116760428,9	MCF-7	breast:
14	chr7:116625923..116629048-chr7:116633177..116636894,3	K562	blood:
15	chr7:116628188..116629030-chr7:116767031..116767550,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000135269	Chromatin interaction
ENSG00000227199	Chromatin interaction
ENSG00000004866	Chromatin interaction
ENSG00000214188	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73714359	1.00[AFR][1000 genomes]
rs73714373	1.00[AFR][1000 genomes]
rs73714375	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831107	chr7:116414734-116649466	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116597000-116641600	Weak transcription	Ovary	ovary
2	chr7:116598800-116630400	Weak transcription	Aorta	Aorta
3	chr7:116607600-116632400	Weak transcription	Gastric	stomach
4	chr7:116610600-116638800	Weak transcription	Hela-S3	cervix
5	chr7:116612000-116632000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:116612200-116628800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr7:116613600-116635600	Weak transcription	Pancreas	Pancrea
8	chr7:116613600-116647000	Weak transcription	Right Atrium	heart
9	chr7:116622600-116633600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr7:116623800-116635000	Weak transcription	Left Ventricle	heart
11	chr7:116624400-116632000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr7:116627400-116635000	Weak transcription	Fetal Heart	heart
13	chr7:116627600-116629800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr7:116627600-116632000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr7:116627600-116634200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr7:116627600-116639000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr7:116627800-116630400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:116627800-116638000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr7:116627800-116648200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr7:116627800-116648800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr7:116628400-116630200	Weak transcription	GM12878-XiMat	blood
22	chr7:116628600-116629000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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