Variant report

Variant	rs73716954
Chromosome Location	chr7:117952900-117952901
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10263549	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10275415	1.00[AMR][1000 genomes]
rs10276468	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10282510	1.00[AMR][1000 genomes]
rs28550410	1.00[AMR][1000 genomes]
rs28595692	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28609746	1.00[AMR][1000 genomes]
rs28728464	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73716939	1.00[AMR][1000 genomes]
rs73716946	1.00[AMR][1000 genomes]
rs73716950	1.00[AMR][1000 genomes]
rs73716959	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73716960	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv889090	chr7:117865940-118067460	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv889091	chr7:117899190-117963926	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1029103	chr7:117917362-118035987	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2764014	chr7:117917374-118035999	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv608261	chr7:117917719-117965390	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv608262	chr7:117926753-118036133	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv429805	chr7:117940049-118026049	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117949800-117955000	Enhancers	Dnd41	blood
2	chr7:117950000-117953000	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr7:117951000-117953000	Enhancers	HMEC	breast
4	chr7:117951600-117953000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr7:117951600-117953000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr7:117952200-117953000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
7	chr7:117952200-117953200	Enhancers	H1 Cell Line	embryonic stem cell
8	chr7:117952400-117953000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr7:117952400-117953000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
10	chr7:117952400-117953200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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